Differences

This shows you the differences between two versions of the page.

--- project:bioosm:start [2018/06/07 15:59] – sachy
+++ project:bioosm:start [2022/09/18 16:53] – sachy
@@ Line 3: / Line 3: @@
 {{template>:project:infobox|
 name=Biologicke zbrane ve vasem okoli|
-image= :project:bioosm:biohazard.svg?200 |
+image= bioosm:bioosm.jpg?400 |
-founder=[[user:sachy:start]]|
+founder=[[user:sachy]]|
-interested=[[user:sumie]]|
+interested=[[user:sumie-dh]]|
-sw=CC|
+sw=CC-BY-SA|
 hw=N/A|
 status=active}}
 ~~META:
 status = active
-&relation firstimage = :project:bioosm:biohazard.svg
+&relation firstimage = :project:bioosm:bioosm.jpg
 ~~
 [[http://brmlab.s0c4.net/bioosm/|BioOSM]] je mapa vyskytu mikroorganismu (ras, bakterii, plostenek, ...) a do budoucna i dalsich prirodnin (mineralu, ...).
+==== K cemu to je ====
+  * interaktivni mapa vhodna k zobrazovani vetsiho mnozstvi fotek, brmlabi wiki, sluzby typu phtagr a soup se zdaly nevhodne k publikaci tohoto typu obsahu, wiki by byla prilis obludna, na beznych sdilecich obrazkovych sluzbach se neda nic pohodlne dohledavat a davat tam biologicky smysluplne a prehledne popisky
+  * monitoring zivocichu a rostlin podle zajmu prispevovatelu
+  * snadne klikaci katalogovani nalezu skrze Tellico nevyzadujici coding skills
+  * TODO - jednoduche selekce zajmoveho okruhu subjektu [napr. podle rodu, biotopu, datumu] na mape
+  * procvicovani temne magie commandu grep, sed a regexpu
 ==== Jak to funguje ====
@@ Line 20: / Line 28: @@
 Podklad jsou [[https://openstreetmap.org|OSM]], ktere maji API [[http://openlayers.org/|OpenLayers]] jez umoznuje pridavat do mapy vlastni body, vrstvy...
-Jednotliva pozorovani jsou v databazi [[http://tellico-project.org/|Tellico]]. Udelal jsem script parse_tellico.sh, ktery z .tc databaze (je to vlastne ZIP s XML uvnitr) vyparsuje jednotlive polozky a vygeneruje HTML soubor s mapou a podadresar "det" s HTML strankami s detaily jednotlivych pozorovani.
+Jednotliva pozorovani jsou v databazi [[http://tellico-project.org/|Tellico]]. Udelal jsem script parse_tellico.sh, ktery z .tc databaze (je to vlastne ZIP s XML uvnitr) vyparsuje jednotlive polozky a vygeneruje HTML soubor s mapou a podadresar "det" s HTML strankami s detaily jednotlivych pozorovani. Vygeneruje se taky JSON s vyparsovanymi polozkami, ktery lze z webu projektu stahnout.
+Pro nadsence je vygenerovany taky prehled prispevku plainlog.htm serazeny dle data pridani do databaze.
+Pokud chcete vedet co je noveho, odebirejte projektovou [[http://brmlab.s0c4.net/bioosm/bioosm.rss|RSS]]
 Obrazky v plnem rozliseni jsou v podadresari "img", nahledy v "simg". Videa jsou nahrana na YT a misto nahledu maji generickou ikonu.
-Pozorovani ktera se v mape zobrazi lze filtrovat dle prislusnosti k radu (bakterie, zvirata, rostliny,...) pripadne cimkoli co lze grepnout z Tellico XML.
+Pozorovani ktera se v mape zobrazi lze filtrovat dle prislusnosti k radu (bakterie, zvirata, rostliny,...) az po prislusnost k jednotlivym druhum.
 === Tellico sample database ===
@@ Line 40: / Line 52: @@
   - seskupeni dle lokality
-<code>
+<code bash>
 praseTC=$(unzip -p "$1" tellico.xml | tr -d '\n' | sed -e $'s/<entry id="/\\\n<entry id="/g' -e $'s/<\/entry>/<\/entry>\\\n/g' | grep -Pe '^<entry id="' | grep "<strcit-do-mapy>yep</strcit-do-mapy>" | sed -E 's/(^.*)(<locality>.*<\/locality>)(.*$)/\2\1\3/' | sort)
 </code>
@@ Line 47: / Line 59: @@
 Nazvy vrstev musi byt v JS poli kvuli ovladacimu API (skryti/zobrazeni)
-<code>
+<code javascript>
 var laycon = [vectorLayer,ALL];
 ...
@@ Line 53: / Line 65: @@
 </code>
-<code>
+<code javascript>
 var controls = {
   selector: new OpenLayers.Control.SelectFeature(laycon,{onSelect: createPopup, onUnselect: destroyPopup})
@@ Line 62: / Line 74: @@
 === Prepnuti viditelnych vrstev ===
-<code>
+<code javascript>
 function kinchange() {
   kinsel=document.getElementById('kin');
@@ Line 74: / Line 86: @@
 === Nastaveni brmlabu do paticky map ===
-<code>
+<code javascript>
 OpenLayers.Layer.Vector('Overlay',{attribution:'<a href="http://brmlab.cz">Brmlab</a>'});
 </code>
@@ Line 81: / Line 93: @@
 OSM maji defaultne copyright nesmyslne odsazeny od spodniho okraje mapy, CSS zmena na nejaky rozumny offset:
-<code>
+<code javascript>
 .olControlAttribution
 {
@@ Line 89: / Line 101: @@
 ==== parse_tellico.sh ====
-<code>
+<code bash parse_tellico.sh>
 #!/bin/bash
 # Parse Tellico database to BioOSM index.htm
@@ Line 95: / Line 107: @@
 # Print result to stdout
 #
-# Generate minis in simg folder
+# <iframe width="500" height="500" frameborder="0" scrolling="no" marginheight="0" marginwidth="0" src="https://www.openstreetmap.org/export/embed.html?bbox=14.978000%2C49.990000%2C15.022000%2C50.010000&amp;layer=mapnik&amp;marker=50.000000%2C15.000000"></iframe>
-# find ./ -type f -exec mogrify -verbose -layers Dispose -resize 128\>x128\> -quality 100% {} +
+# // vectorLayer.removeFeatures(atol)
-#
+# // map.removeLayer(vectorLayer)
 #
 #
 # Creates:
-#   (to stdout) index.htm file with the map and static entries
+#   (to stdout) HTML file with the map and static entries
 #   ./det/ID.htm details of each and every entry
+#   ./bioosm.json JSON of all entries
+#   ./bioosm.rss updated RSS feed
+#   ./plainlog.htm sorted entries for easy human/alg
 #
 rm -rfv "./det/*"
 mkdir -p "./det"
-#cat "./index_head.htm"
+ICON_animalia="animalia.png"
+ICON_bacteria="bacteria.png"
+ICON_fungi="fungi.png"
+ICON_chromista="chromista.png"
+ICON_plantae="plantae.svg"
+ICON_plostenkoid="plostenkoid.png"
+ICON_protista="protista.png"
+ICON_biohazard="biohazard.svg"
+json=""
+rss=$'<?xml version="1.0" encoding="UTF-8" ?>\n'
+rss+=$'<rss version="2.0">\n'
+rss+=$'<channel>\n'
+rss+=$'<title>Brmlab BioOSM RSS feed</title>\n'
+rss+=$'<description>New entries on BioOSM database</description>\n'
+rss+=$'<link>https://bioosm.s0c4.net</link>\n'
+rss+=$'<lastBuildDate></lastBuildDate>\n'
+rss+=$'<pubDate></pubDate>\n'
+rss+=$'<ttl>86400</ttl>\n'
+# Return icon by Regnum
+function geticon () {
+	case "$1" in
+		"Animalia")
+			echo "$ICON_animalia";;
+		"Bacteria")
+			echo "$ICON_bacteria";;
+		"Fungi")
+			echo "$ICON_fungi";;
+		"Chromista")
+			echo "$ICON_chromista";;
+		"Plantae")
+			echo "$ICON_plantae";;
+		"Protista")
+			echo "$ICON_protista";;
+		*)
+			echo "$ICON_biohazard";;
+	esac
+}
+function safehtml () {
+	echo "$1" | sed -e "s/'/\&#39;/g" -e 's/"/\&#34;/g' -e 's/</\&lt;/g' -e 's/>/\&gt;/g' -e 's/^[ ]*//g' -e 's/[ ]*$//g'
+}
+i=1 # GLOBAL increment must persist multiple spagety() calls; incremented to infinity
+# Core function generating entries matching selection criteria (ie Kingdom)
+# !!! BEZ ODSAZENI !!!
+# $1 = list of entries
+# $2 = layer name
+# $3 = icon of the points
+function spagety () {
+	bylo="" # Minula pozice
+	sam="" # HTML samostatneho zaznamu
+	osam="" # predchozi $sam
+	spoj="" # HTML had z popisu stejnych pozic
+	ospoj="" # Predchozi $spoj
+	ox="" # Old X
+	oy="" # Old Y
+	datelog="" # Entries sorted by date for plaintext log
+	json="var data='{\"version\":\"$(date --rfc-3339=seconds)\",\"arma\":["
+	while IFS='' read -r radek || [[ -n "$radek" ]]; do
+		co=$(echo "$radek" | grep -oe ' <title>.*</title> ' | sed -E 's/( )*<(\/)?title>( )*//g')
+		co=$(safehtml "$co")
+		obr=$(echo "$radek" | grep -oe ' <image>.*</image> ' | sed -E 's/( )*<(\/)?image>( )*//g' | grep -oPe '[^/]*$')
+		obr=$(safehtml "$obr")
+		kde=$(echo "$radek" | grep -oe '<locality>.*</locality>' | grep -oPe '[0-9]+\.[0-9]{1,10}[, ]*[0-9]+\.[0-9]{1,10}')
+		kde=$(safehtml "$kde")
+		kdex=$(echo "$kde" | grep -oPe '[0-9]+\.[0-9]{1,10}$')
+		kdex=$(safehtml "$kdex")
+		kdey=$(echo "$kde" | grep -oPe '^[0-9]+\.[0-9]{1,10}')
+		kdey=$(safehtml "$kdey")
+		kdy=$(echo "$radek" | grep -oe ' <taken-date>.*</taken-date> ' | sed -E 's/( )*<(\/)?taken-date>( )*//g' | sed -E 's/([0-9]+)\.([0-9]+)\.([0-9]{4})/\3-\2-\1/g' | sed -E 's/-([0-9])-/-0\1-/g' | sed -E 's/-([0-9])$/-0\1/g')
+		kdy=$(safehtml "$kdy")
+		skop_typ=$(echo "$radek" | grep -oe ' <new-field-1>.*</new-field-1> ' | sed -E 's/( )*<(\/)?new-field-1>( )*//g')
+		skop_typ=$(safehtml "$skop_typ")
+		skop=$(echo "$radek" | grep -oe ' <microscope>.*</microscope> ' | sed -E 's/( )*<(\/)?microscope>( )*//g')
+		skop=$(safehtml "$skop")
+		imp=$(echo "$radek" | grep -oe ' <new-field-3>.*</new-field-3> ' | sed -E 's/( )*<(\/)?new-field-3>( )*//g')
+		imp=$(safehtml "$imp")
+		reg=$(echo "$radek" | grep -oe ' <new-field-4>.*</new-field-4> ' | sed -E 's/( )*<(\/)?new-field-4>( )*//g')
+		reg=$(safehtml "$reg")
+		phy=$(echo "$radek" | grep -oe ' <phylum>.*</phylum> ' | sed -E 's/( )*<(\/)?phylum>( )*//g')
+		phy=$(safehtml "$phy")
+		cla=$(echo "$radek" | grep -oe ' <class>.*</class> ' | sed -E 's/( )*<(\/)?class>( )*//g')
+		cla=$(safehtml "$cla")
+		ord=$(echo "$radek" | grep -oe ' <order>.*</order> ' | sed -E 's/( )*<(\/)?order>( )*//g')
+		ord=$(safehtml "$ord")
+		fam=$(echo "$radek" | grep -oe ' <family>.*</family> ' | sed -E 's/( )*<(\/)?family>( )*//g')
+		fam=$(safehtml "$fam")
+		gen=$(echo "$radek" | grep -oe ' <genus>.*</genus> ' | sed -E 's/( )*<(\/)?genus( )*>//g')
+		gen=$(safehtml "$gen")
+		spe=$(echo "$radek" | grep -oe ' <species>.*</species> ' | sed -E 's/( )*<(\/)?species>( )*//g')
+		spe=$(safehtml "$spe")
+		loc=$(echo "$radek" | grep -oe ' <locality---plaintext>.*</locality---plaintext> ' | sed -E 's/( )*<(\/)?locality---plaintext>( )*//g')
+		loc=$(safehtml "$loc")
+		des=$(echo "$radek" | grep -oe ' <description>.*</description> ' | sed -E 's/( )*<(\/)?description>( )*//g')
+		des=$(safehtml "$des")
+		vid=$(echo "$radek" | grep -oe ' <videolink>.*</videolink> ' | sed -E 's/( )*<(\/)?videolink>( )*//g')
+		vid=$(safehtml "$vid")
+		bio=$(echo "$radek" | grep -oe ' <biotope>.*</biotope> ' | sed -E 's/( )*<(\/)?biotope>( )*//g')
+		bio=$(safehtml "$bio")
+		eng=$(echo "$radek" | grep -oe ' <enlargement>.*</enlargement> ' | sed -E 's/( )*<(\/)?enlargement>( )*//g')
+		eng=$(safehtml "$eng")
+		obs=$(echo "$radek" | grep -oe ' <observer>.*</observer> ' | sed -E 's/( )*<(\/)?observer>( )*//g')
+		obs=$(safehtml "$obs")
+		lnk=$(echo "$radek" | grep -oe ' <localitylink>.*</localitylink> ' | sed -E 's/( )*<(\/)?localitylink>( )*//g')
+		lnk=$(safehtml "$lnk")
+		har=$(echo "$radek" | grep -oe ' <harvesting-method>.*</harvesting-method> ' | sed -E 's/( )*<(\/)?harvesting-method>( )*//g')
+		den=$(echo "$radek" | grep -oe ' <population-density>.*</population-density> ' | sed -E 's/( )*<(\/)?population-density>( )*//g')
+		dur=$(echo "$radek" | grep -oe ' <min>.*</min> ' | sed -E 's/( )*<(\/)?min>( )*//g')
+		lor=$(echo "$radek" | grep -oe ' <locality-reference>.*</locality-reference> ' | sed -E 's/( )*<(\/)?locality-reference>( )*//g')
+		lrl=$(echo "$radek" | grep -oe ' <locality-reference---link>.*</locality-reference---link> ' | sed -E 's/( )*<(\/)?locality-reference---link>( )*//g')
+		lov=$(echo "$radek" | grep -oe ' <locality---vobrazek>.*</locality---vobrazek> ' | sed -E 's/( )*<(\/)?locality---vobrazek>( )*//g' | grep -oPe '[^/]*$')
+		# >&2 echo "$co - $har - $den - $dur - $lor - $lrl - $lov"
+		detid=$(echo "brmlab$co$obr$kde$kdy" | md5sum | grep -oe '[a-zA-Z0-9]*')
+		if [[ "$kdex" = "" ]]; then
+			>&2 echo -e "\033[31m" $(echo "$radek" | grep -oe '<locality>.*</locality>') " $co\033[0m"
+			continue;
+		fi
+		zkurvenetellico=$(echo "$obr" | grep -oe '\.[a-zA-Z]*$')
+		if [[ "$zkurvenetellico" = ".jpeg" ]]; then
+			>&2 echo -e "\033[31m$obr $co\033[0m"
+			continue;
+		fi
+		if [[ "$spe" = "sp." ]]; then
+			wikisp="https://en.wikipedia.org/wiki/$gen"
+		else
+			wikisp="https://en.wikipedia.org/wiki/$gen $spe"
+		fi
+		json+="{"
+		json+=" \"qualis\":\"$co\","
+		json+=" \"imperium\":\"$imp\","
+		json+=" \"regnum\":\"$reg\","
+		json+=" \"phylum\":\"$phy\","
+		json+=" \"classis\":\"$cla\","
+		json+=" \"ordo\":\"$ord\","
+		json+=" \"familia\":\"$fam\","
+		json+=" \"genus\":\"$gen\","
+		json+=" \"specie\":\"$spe\","
+		json+=" \"locus\":\"$kde\","
+		json+=" \"x\":\"$kdex\","
+		json+=" \"y\":\"$kdey\","
+		json+=" \"locplain\":\"$loc\","
+		json+=" \"depictio\":\"$des\","
+		json+=" \"quando\":\"$kdy\","
+		json+=" \"obr\":\"$obr\","
+		json+=" \"micro\":\"$skop\","
+		json+=" \"microtyp\":\"$skop_typ\","
+		json+=" \"vid\":\"$vid\","
+		json+=" \"bio\":\"$bio\","
+		json+=" \"amp\":\"$eng\","
+		json+=" \"spec\":\"$obs\","
+		json+=" \"detid\":\"$detid\","
+		json+=" \"har\":\"$har\","
+		json+=" \"den\":\"$den\","
+		json+=" \"dur\":\"$dur\","
+		json+=" \"lor\":\"$lor\","
+		json+=" \"lrl\":\"$lrl\","
+		json+=" \"lov\":\"$lov\","
+		json+=" \"lnk\":\"$lnk\"" # Lastone without ','
+		json+="},"
+		rss+=$'<item>\n'
+		rss+=$'  <title>'"$co"$'</title>\n'
+		rss+=$'  <description>'"$des"$'</description>\n'
+		rss+=$'  <link>http://brmlab.s0c4.net/bioosm/det/'"$detid"$'.htm</link>\n'
+		rss+=$'  <guid isPermaLink="false">'"$detid"$'</guid>\n'
+		rss+=$'  <pubDate>'"$kdy"$'</pubDate>\n'
+		rss+=$'</item>\n'
+		# Generate detail page
+		detid=$(echo "brmlab$co$obr$kde$kdy" | md5sum | grep -oe '[a-zA-Z0-9]*')
+		detpg="<html><head>"
+		detpg+="<meta http-equiv='Content-Type' content='text/html; charset=utf-8'>"
+		detpg+="<link rel='stylesheet' href='../style.css' type='text/css'>"
+		detpg+="<title>Brmlab - BioOSM $co $kde</title>"
+		detpg+="</head><body>"
+		detpg+="<table class='dettbl'><tr>"
+		detpg+="<h1>$co (<a href='$wikisp' target='_blank'>wiki</a>)</h1>"
+		detpg+="<td style='width:33%;vertical-align:top'>"
+		if [[ "$imp" != "" ]]; then
+			detpg+="<b>Imperium:</b> <a href='https://en.wikipedia.org/wiki/$imp' target='_blank'>$imp</a><br>"
+		fi
+		if [[ "$reg" != "" ]]; then
+			detpg+="<b>Regnum:</b> <a href='https://en.wikipedia.org/wiki/$reg' target='_blank'>$reg</a><br>"
+		fi
+		if [[ "$phy" != "" ]]; then
+			detpg+="<b>Phylum:</b> <a href='https://en.wikipedia.org/wiki/$phy' target='_blank'>$phy</a><br>"
+		fi
+		if [[ "$cla" != "" ]]; then
+			detpg+="<b>Classis:</b> <a href='https://en.wikipedia.org/wiki/$cla' target='_blank'>$cla</a><br>"
+		fi
+		if [[ "$ord" != "" ]]; then
+			detpg+="<b>Ordo:</b> <a href='https://en.wikipedia.org/wiki/$ord' target='_blank'>$ord</a><br>"
+		fi
+		if [[ "$fam" != "" ]]; then
+			detpg+="<b>Familia:</b> <a href='https://en.wikipedia.org/wiki/$fam' target='_blank'>$fam</a><br>"
+		fi
+		if [[ "$gen" != "" ]]; then
+			detpg+="<b>Genus:</b> <a href='https://en.wikipedia.org/wiki/$gen' target='_blank'>$gen</a><br>"
+		fi
+		if [[ "$spe" != "" ]]; then
+			detpg+="<b>Specie:</b> <a href='$wikisp' target='_blank'>$spe</a><br>"
+		fi
+		detpg+="<br>"
+		if [[ "$kdy" != "" ]]; then
+			detpg+="<b>Quando:</b> $kdy<br>"
+		fi
+		if [[ "$lnk" != "" ]]; then
+			loc="<a href=\"$lnk\" target=\"_blank\">$loc</a>" # Yes, escaped "
+		fi
+		detpg+="<b>Locus:</b> $kde ($loc)<br>"
+		if [[ "$obs" != "" ]]; then
+			detpg+="<b>Spectator:</b> $obs<br>"
+		fi
+		if [[ "$bio" != "" ]]; then
+			detpg+="<b>Biotope:</b> $bio<br>"
+		fi
+		if [[ "$skop" != "" ]]; then
+			detpg+="<b>Microscopium:</b> $skop ($skop_typ)<br>"
+		fi
+		if [[ "$eng" != "" ]]; then
+			detpg+="<b>Amplificatio:</b> $eng<br>"
+		fi
+		if [[ "$vid" != "" ]]; then
+			detpg+="<b>Video:</b> <a href=\"$vid\" target=\"_blank\">$vid</a><br>"
+		fi
+		if [[ "$har" != "" ]]; then
+			detpg+="<b>Collecting method:</b> $har<br>"
+		fi
+		if [[ "$den" != "" ]]; then
+			detpg+="<b>Individuals found:</b> $den<br>"
+		fi
+		if [[ "$dur" != "" ]]; then
+			detpg+="<b>Duration on stage:</b> $dur<br>"
+		fi
+		if [[ "$lrl" != "" ]]; then
+			detpg+="<b>Locality reference:</b> <a href=\"$lrl\" target=\"_blank\">$lor</a><br>"
+		elif [[ "$lor" != "" ]]; then
+			detpg+="<b>Locality reference:</b> $lor<br>"
+		fi
+		if [[ "$des" != "" ]]; then
+			detpg+="<b>Depictio:</b> $des<br>"
+		fi
+		detpg+="<br><b>More on <a href=\"../\">BioOSM map</a></b><br>"
+		detpg+="<br>"
+		lhx=$(echo "$kdex-0.022" | bc)
+		lhy=$(echo "$kdey-0.010" | bc)
+		pdx=$(echo "$kdex+0.022" | bc)
+		pdy=$(echo "$kdey+0.010" | bc)
+		detpg+="<iframe id='minimapa' src='https://www.openstreetmap.org/export/embed.html?bbox=$lhx%2C$lhy%2C$pdx%2C$pdy&amp;layer=mapnik&amp;marker=$kdey%2C$kdex'></iframe>"
+		detpg+="</td><td style='min-width:66%;vertical-align:top'>"
+		if [[ "$obr" != "" ]]; then
+			detpg+="<a href=\"../img/$obr\"><img src=\"../img/$obr\" alt=\"$co\" class='detimg'></a>"
+		else
+			if [[ "$vid" != "" ]]; then
+				detyt=$(echo "$vid" | sed -e 's/youtube.com\/watch?v=/youtube.com\/embed\//g')
+				detpg+="<iframe class='detvid' src='$detyt' frameborder='0' allow='encrypted-media' allowfullscreen></iframe>"
+			else
+				detpg+="<img src=\"../$3\" alt=\"video\" class='detimg'>"
+			fi
+		fi
+		if [[ "$lov" != "" ]]; then
+			detpg+="<img class=\"detimg\" src=\"../lokality/$lov\" alt=\"Locality photo\"><br>"
+		fi
+		detpg+="</td></tr></table>"
+		detpg+="</body></html>"
+		echo "$detpg" > "./det/$detid.htm"
+		# Plain log of entries
+		datelog+="$kdy $kde <a href='./det/$detid.htm' target='_blank'>$co</a><br>\n"
+		>&2 echo -e "\033[32m$co $obs\033[0m"
+		ox="$kdex"
+		oy="$kdey"
+		i=$(($i+1))
+	done <<< $(echo "$1") # Zere parametr spaget, nikoli $1 scriptu !!!
+	echo "$json{}]}" | sed -e "s/^var data='//g" > "./bioosm.json"
+	echo "$json{}]}'"
+	rss+=$'</channel>\n'
+	rss+=$'</rss>\n'
+	echo "$rss" > "./bioosm.rss"
+} # KONEC FCE SPAGETY
 # Parse Tellico file to list of entries
@@ Line 114: / Line 432: @@
 # Sorted unique Kingdoms (to be passed as selection criteria)
 kingdoms=$(echo "$praseTC" | grep -oe ' <new-field-4>.*</new-field-4> ' | sed -E 's/( )*<(\/)?new-field-4>( )*//g' | sort | uniq)
 echo '<!DOCTYPE html>'
@@ Line 120: / Line 437: @@
 echo '<head>'
 echo '	<meta http-equiv="Content-Type" content="text/html; charset=utf-8">'
-echo '	<title>BioOSM</title>'
+echo '	<title>brmlab - BioOSM</title>'
 echo '	<link rel="stylesheet" href="./style.css" type="text/css">'
+echo '	<link rel="favicon" href="./'$ICON_biohazard'">'
 echo '	<script src="./OpenLayers.js"></script>'
 echo '</head>'
+echo '<body>'
+# Generate select
+echo "<div id='plainlog'><b><a href='./bioosm.rss'>RSS feed</a><br><a href='./plainlog.htm'>Quick news log</a></b></div>"
+echo "<h1 id='title'>BioOSM - arma biologica in tuis vicinia</h1>"
+ksel="<select id='reg' onChange='genphy()'>"
+ksel="$ksel<option value='ALL' selected>ALL</option>"
+while IFS='' read -r king || [[ -n "$king" ]]; do
+	ksel="$ksel<option value='"$king"'>$king</option>"
+done <<< $(echo "$kingdoms")
+ksel="$ksel</select>"
+echo "Regnum: $ksel "
-echo "<body>"
+echo "Phylum: <select id='phy' onChange='gencla()'><option>ALL</option></select> "
-	echo "<h1 id='title'>BioOSM - armis biologica in tuis vicinia</h1>"
+echo "Classis: <select id='cla' onChange='genord()'><option>ALL</option></select> "
+echo "Ordo: <select id='ord' onChange='genfam()'><option>ALL</option></select> "
-	# Generate select
+echo "Familia: <select id='fam' onChange='gengen()'><option>ALL</option></select> "
-	ksel="<select id='kin' onChange='kinchange()'>"
+echo "Genus: <select id='gen' onChange='genspe()'><option>ALL</option></select>"
-	ksel="$ksel<option value='ALL' selected>ALL</option>"
+echo "Specie: <select id='spe' onChange='armageddon()'><option>ALL</option></select>"
-	while IFS='' read -r king || [[ -n "$king" ]]; do
+echo "<br><input type='button' value='Platyhelminthes' onClick='plostenkoidy()'>"
-		ksel="$ksel<option value='"$king"'>$king</option>"
+echo "<input type='checkbox' id='studchecker' onChange='studdrv()'>&nbsp;Springs"
-	done <<< $(echo "$kingdoms")
+#echo "<input type='button' value='Bugs' onClick='buggy()'>"
-	ksel="$ksel</select>"
+echo "<br><br><div id='map' class='smallmap'></div>"
-	echo "Regnum: $ksel | "
+echo "<br><p>Welcome! You can download the <a href='./bioosm.json' target='_blank'>source data as JSON file</a><br>"
-	echo "<input type='button' value='Plostenkoidy' onClick='plostenkoid()'><br><br>"
+echo "This site is owned by members of the <a href='https://brmlab.cz' target='_blank'>hackerspace brmlab</a>. See our wiki page for <a href='https://brmlab.cz/project/bioosm/start' target='_blank'>details and contact info</a><br>License: CC-BY-SA</p>"
-  echo "<div id='map' class='smallmap'></div>"
 echo "</body>"
-echo '<script>'
+echo "<script>"
 echo 'map = new OpenLayers.Map("map");'
 echo 'map.addLayer(new OpenLayers.Layer.OSM());'
@@ Line 158: / Line 484: @@
 echo '	new OpenLayers.Geometry.Point(14.41876, 50.10554).transform(epsg4326, projectTo),'
 echo '		{description:"Atomovy atol Brmkini"} ,'
-echo '		{externalGraphic: "./biohazard.svg", graphicHeight:24, graphicWidth:24, graphicXOffset:-12, graphicYOffset:-12},'
+echo '		{externalGraphic: "./biohazard.svg", graphicHeight:8, graphicWidth:8, graphicXOffset:-4, graphicYOffset:-4},'
 echo ');'
 echo 'vectorLayer.addFeatures(atol);'
@@ Line 164: / Line 490: @@
 echo "map.addLayer(vectorLayer);"
+spagety "$praseTC" "ALL" "$ICON_biohazard"
+echo '</script>'
+echo '<script src="./bioosm.js"></script>' # Must be after JSON
+echo "</html>"
-i=1 # GLOBAL increment must persist multiple spagety() calls; incremented to infinity
+# Create plaintext log
-# Core function generating entries matching selection criteria (ie Kingdom)
+dateloghtm="<html><head>"
-# !!! BEZ ODSAZENI !!!
+dateloghtm+="<meta http-equiv='Content-Type' content='text/html; charset=utf-8'>"
-# $1 = list of entries
+dateloghtm+="<link rel='stylesheet' href='./style.css' type='text/css'>"
-# $2 = layer name
+dateloghtm+="<title>Brmlab - BioOSM plaintext log</title>"
-# $3 = icon of the points
+dateloghtm+="</head><body>"
-function spagety () {
+datelogsort=$(echo -e "$datelog" | sort -r | uniq)
+dateloghtm+="$datelogsort"
+dateloghtm+="</body></html>"
+echo "$dateloghtm" > "./plainlog.htm"
+</code>
-bylo="" # Minula pozice
+==== bioosm.js ====
-sam="" # HTML samostatneho zaznamu
-osam="" # predchozi $sam
-spoj="" # HTML had z popisu stejnych pozic
-ospoj="" # Predchozi $spoj
-ox="" # Old X
-oy="" # Old Y
-while IFS='' read -r radek || [[ -n "$radek" ]]; do
+<code javascript bioosm.js>
+var blob=JSON.parse(data)
+var arma=blob.arma
+var stud=JSON.parse('{}');
-	co=$(echo "$radek" | grep -oe ' <title>.*</title> ' | sed -E 's/( )*<(\/)?title>( )*//g')
+var vectorLayerDynamic = new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href="http://brmlab.cz">Brmlab</a>'});
-	obr=$(echo "$radek" | grep -oe ' <image>.*</image> ' | sed -E 's/( )*<(\/)?image>( )*//g' | grep -oPe '[^/]*$')
+map.addLayer(vectorLayerDynamic);
-	kde=$(echo "$radek" | grep -oe '<locality>.*</locality>' | grep -oPe '[0-9]{2}\.[0-9]{1,10}[, ]*[0-9]{2}\.[0-9]{1,10}')
+var studlay = new OpenLayers.Layer.Vector("Overlay",{attribution:"<a href=\"http://brmlab.cz\">Brmlab</a>"}); // studanky
-	kdex=$(echo "$kde" | grep -oPe '[0-9]{2}\.[0-9]{1,10}$')
+map.addLayer(studlay);
-	kdey=$(echo "$kde" | grep -oPe '^[0-9]{2}\.[0-9]{1,10}')
-	kdy=$(echo "$radek" | grep -oe ' <taken-date>.*</taken-date> ' | sed -E 's/( )*<(\/)?taken-date>( )*//g')
-	skop_typ=$(echo "$radek" | grep -oe ' <new-field-1>.*</new-field-1> ' | sed -E 's/( )*<(\/)?new-field-1>( )*//g')
-	skop=$(echo "$radek" | grep -oe ' <microscope>.*</microscope> ' | sed -E 's/( )*<(\/)?microscope>( )*//g')
-	imp=$(echo "$radek" | grep -oe ' <new-field-3>.*</new-field-3> ' | sed -E 's/( )*<(\/)?new-field-3>( )*//g')
-	reg=$(echo "$radek" | grep -oe ' <new-field-4>.*</new-field-4> ' | sed -E 's/( )*<(\/)?new-field-4>( )*//g')
-	phy=$(echo "$radek" | grep -oe ' <phylum>.*</phylum> ' | sed -E 's/( )*<(\/)?phylum>( )*//g')
-	cla=$(echo "$radek" | grep -oe ' <class>.*</class> ' | sed -E 's/( )*<(\/)?class>( )*//g')
-	ord=$(echo "$radek" | grep -oe ' <order>.*</order> ' | sed -E 's/( )*<(\/)?order>( )*//g')
-	fam=$(echo "$radek" | grep -oe ' <family>.*</family> ' | sed -E 's/( )*<(\/)?family>( )*//g')
-	gen=$(echo "$radek" | grep -oe ' <genus>.*</genus> ' | sed -E 's/( )*<(\/)?genus( )*>//g')
-	spe=$(echo "$radek" | grep -oe ' <species>.*</species> ' | sed -E 's/( )*<(\/)?species>( )*//g')
-	loc=$(echo "$radek" | grep -oe ' <locality---plaintext>.*</locality---plaintext> ' | sed -E 's/( )*<(\/)?locality---plaintext>( )*//g')
-	des=$(echo "$radek" | grep -oe ' <description>.*</description> ' | sed -E 's/( )*<(\/)?description>( )*//g')
-	vid=$(echo "$radek" | grep -oe ' <videolink>.*</videolink> ' | sed -E 's/( )*<(\/)?videolink>( )*//g')
-	bio=$(echo "$radek" | grep -oe ' <biotope>.*</biotope> ' | sed -E 's/( )*<(\/)?biotope>( )*//g')
-	eng=$(echo "$radek" | grep -oe ' <enlargement>.*</enlargement> ' | sed -E 's/( )*<(\/)?enlargement>( )*//g')
-	obs=$(echo "$radek" | grep -oe ' <observer>.*</observer> ' | sed -E 's/( )*<(\/)?observer>( )*//g')
+var regsel=document.getElementById("reg")
+var physel=document.getElementById("phy")
+var clasel=document.getElementById("cla")
+var ordsel=document.getElementById("ord")
+var famsel=document.getElementById("fam")
+var gensel=document.getElementById("gen")
+var spesel=document.getElementById("spe")
-	if [[ "$kdex" = "" ]]; then
+var ICON_animalia="animalia.png"
-		>&2 echo $(echo "$radek" | grep -oe '<locality>.*</locality>') " $co"
+var ICON_bacteria="bacteria.png"
-		continue;
+var ICON_fungi="fungi.png"
-	fi
+var ICON_chromista="chromista.png"
-	zkurvenetellico=$(echo "$obr" | grep -oe '\.[a-zA-Z]*$')
+var ICON_plantae="plantae.svg"
-	if [[ "$zkurvenetellico" = ".jpeg" ]]; then
+var ICON_plostenkoid="plostenkoid.png"
-		>&2 echo "$obr $co"
+var ICON_protista="protista.png"
-		continue;
+var ICON_biohazard="biohazard.svg"
-	fi
+var ICON_studanka="studanka.png"
+function getJSONstud()
+{
+	url="./stud.json";
+	var request;
+	if(window.XMLHttpRequest)
+		request=new XMLHttpRequest();
+	else
+		request=new ActiveXObject("Microsoft.XMLHTTP");
+	request.onreadystatechange=function()
+	{
+		if(request.readyState==4)
+		{
+			stud=JSON.parse(request.responseText);
+			studdraw(stud);
+		}
+	}
+	request.open("GET",url,true);
+	request.send();
+}
-	# Generate detail page
+function studdraw(sj)
-	detid=$(echo "brmlab$co$obr$kde$kdy" | md5sum | grep -oe '[a-zA-Z0-9]*')
+{
-	detpg="<html><head>"
+	studlay.destroyFeatures();
-	detpg="$detpg<meta http-equiv='Content-Type' content='text/html; charset=utf-8'>"
+	sjs=stud.std;
-	detpg="$detpg<link rel='stylesheet' href='../style.css' type='text/css'>"
+	s=[];
-	detpg="$detpg<title>Brmlab - BioOSM $co $kde</title>"
-	detpg="$detpg</head><body>"
+	for(i=0;i<sjs.length;i++)
-	detpg="$detpg<table class='dettbl'><tr>"
+	{
-	detpg="$detpg<td><h1>$co</h1>"
+		s[i] = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point(sjs[i].lon,sjs[i].lat).transform(epsg4326,projectTo),{'description':"<table class=\"hadtbl\">"+sjs[i].name+"</table>"},{'externalGraphic':ICON_studanka,'graphicHeight':24,'graphicWidth':24,'graphicXOffset':-12,'graphicYOffset':-12});
-	if [[ "$imp" != "" ]]; then
+		studlay.addFeatures(s[i]);
-		detpg="$detpg<b>Imperium:</b> $imp<br>"
+	}
-	fi
+}
-	if [[ "$reg" != "" ]]; then
-		detpg="$detpg<b>Regnum:</b> $reg<br>"
+function studdrv()
-	fi
+{
-	if [[ "$phy" != "" ]]; then
+	box=document.getElementById("studchecker");
-		detpg="$detpg<b>Phylum:</b> $phy<br>"
+	if(box.checked)
-	fi
+		getJSONstud();
-	if [[ "$cla" != "" ]]; then
-		detpg="$detpg<b>Classis:</b> $cla<br>"
-	fi
-	if [[ "$ord" != "" ]]; then
-		detpg="$detpg<b>Ordo:</b> $ord<br>"
-	fi
-	if [[ "$fam" != "" ]]; then
-		detpg="$detpg<b>Familia:</b> $fam<br>"
-	fi
-	if [[ "$gen" != "" ]]; then
-		detpg="$detpg<b>Genus:</b> $gen<br>"
-	fi
-	if [[ "$spe" != "" ]]; then
-		detpg="$detpg<b>Specie:</b> $spe<br>"
-	fi
-	detpg="$detpg<br>"
-	if [[ "$kdy" != "" ]]; then
-		detpg="$detpg<b>Quando:</b> $kdy<br>"
-	fi
-	detpg="$detpg<b>Locus:</b> $kde ($loc)<br>"
-	if [[ "$obs" != "" ]]; then
-		detpg="$detpg<b>Spectator:</b> $obs<br>"
-	fi
-	if [[ "$bio" != "" ]]; then
-		detpg="$detpg<b>Biotope:</b> $bio<br>"
-	fi
-	detpg="$detpg<br>"
-	if [[ "$skop" != "" ]]; then
-		detpg="$detpg<b>Microscopium:</b> $skop ($skop_typ)<br>"
-	fi
-	if [[ "$eng" != "" ]]; then
-		detpg="$detpg<b>Amplificatio:</b> $eng<br>"
-	fi
-	detpg="$detpg<br>"
-	if [[ "$des" != "" ]]; then
-		detpg="$detpg<b>Depictio:</b> $des<br>"
-	fi
-	if [[ "$vid" != "" ]]; then
-		detpg="$detpg<b>Video:</b> <a href=\"$vid\" target=\"_blank\">$vid</a><br>"
-	fi
-	detpg="$detpg</td><td>"
-	if [[ "$obr" != "" ]]; then
-		detpg="$detpg<a href=\"../img/$obr\"><img src=\"../img/$obr\" alt=\"$co\" class='detimg'></a>"
 	else
-		if [[ "$vid" != "" ]]; then
+		studlay.destroyFeatures();
-			detyt=$(echo "$vid" | sed -e 's/youtube.com\/watch?v=/youtube.com\/embed\//g')
+}
-			detpg="$detpg<iframe class='detvid' src='$detyt' frameborder='0' allow='encrypted-media' allowfullscreen></iframe>"
+// Return icon by Regnum
+function geticon (a,i)
+{
+	var r=""
+	if(document.getElementById("reg").value!="ALL")
+		r=document.getElementById("reg").value
+	else
+	{
+		r=a[i].regnum
+		for(var e=i;e>=0 && a[e].locus==a[i].locus;e--)
+			if(a[e].regnum!=a[i].regnum)
+			{
+				r="ALL";
+				break;
+			}
+	}
+	switch (r)
+	{
+		case "Animalia":
+			return ICON_animalia;
+		case "Bacteria":
+			return ICON_bacteria;
+		case "Fungi":
+			return ICON_fungi;
+		case "Chromista":
+			return ICON_chromista;
+		case "Plantae":
+			return ICON_plantae;
+		case "Protista":
+			return ICON_protista;
+		default:
+			return ICON_biohazard
+	}
+}
+function genphy() {
+	physel.innerHTML="<option>ALL</option>"
+	clasel.innerHTML="<option>ALL</option>"
+	ordsel.innerHTML="<option>ALL</option>"
+	famsel.innerHTML="<option>ALL</option>"
+	gensel.innerHTML="<option>ALL</option>"
+	spesel.innerHTML="<option>ALL</option>"
+	var phyarr=[]
+	for (var i=0;i<arma.length-1;i++)
+	{
+		if(regsel.value==arma[i].regnum && arma[i].phynum!="")
+			phyarr.push(arma[i].phylum)
+	}
+	phyarr.sort()
+	for (var i=0;i<phyarr.length;i++)
+	{
+		if(i==0)
+		{
+			physel.innerHTML+="<option>"+phyarr[0]+"</option>"
+			continue
+		}
+		if(phyarr[i]!=phyarr[i-1])
+			physel.innerHTML+="<option>"+phyarr[i]+"</option>"
+	}
+	armageddon() // Populate the map with monsters...
+}
+function gencla() {
+	clasel.innerHTML="<option>ALL</option>"
+	ordsel.innerHTML="<option>ALL</option>"
+	famsel.innerHTML="<option>ALL</option>"
+	gensel.innerHTML="<option>ALL</option>"
+	spesel.innerHTML="<option>ALL</option>"
+	var claarr=[]
+	for (var i=0;i<arma.length-1;i++)
+	{
+		if(physel.value==arma[i].phylum && arma.classis!="")
+			claarr.push(arma[i].classis)
+	}
+	claarr.sort()
+	for (var i=0;i<claarr.length;i++)
+	{
+		if(i==0)
+		{
+			clasel.innerHTML+="<option>"+claarr[0]+"</option>"
+			continue
+		}
+		if(claarr[i]!=claarr[i-1])
+			clasel.innerHTML+="<option>"+claarr[i]+"</option>"
+	}
+	armageddon() // Populate the map with monsters...
+}
+function genord() {
+	ordsel.innerHTML="<option>ALL</option>"
+	famsel.innerHTML="<option>ALL</option>"
+	gensel.innerHTML="<option>ALL</option>"
+	spesel.innerHTML="<option>ALL</option>"
+	var ordarr=[]
+	for (var i=0;i<arma.length-1;i++)
+	{
+		if(clasel.value==arma[i].classis && arma[i].ordo!="")
+			ordarr.push(arma[i].ordo)
+	}
+	ordarr.sort()
+	for (var i=0;i<ordarr.length;i++)
+	{
+		if(i==0)
+		{
+			ordsel.innerHTML+="<option>"+ordarr[0]+"</option>"
+			continue
+		}
+		if(ordarr[i]!=ordarr[i-1])
+			ordsel.innerHTML+="<option>"+ordarr[i]+"</option>"
+	}
+	armageddon() // Populate the map with monsters...
+}
+function genfam() {
+	famsel.innerHTML="<option>ALL</option>"
+	gensel.innerHTML="<option>ALL</option>"
+	spesel.innerHTML="<option>ALL</option>"
+	var famarr=[]
+	for (var i=0;i<arma.length-1;i++)
+	{
+		if(ordsel.value==arma[i].ordo && arma[i].familia!="")
+			famarr.push(arma[i].familia)
+	}
+	famarr.sort()
+	for (var i=0;i<famarr.length;i++)
+	{
+		if(i==0)
+		{
+			famsel.innerHTML+="<option>"+famarr[0]+"</option>"
+			continue
+		}
+		if(famarr[i]!=famarr[i-1])
+			famsel.innerHTML+="<option>"+famarr[i]+"</option>"
+	}
+	armageddon() // Populate the map with monsters...
+}
+function gengen() {
+	gensel.innerHTML="<option>ALL</option>"
+	spesel.innerHTML="<option>ALL</option>"
+	var genarr=[]
+	for (var i=0;i<arma.length-1;i++)
+	{
+		if(famsel.value==arma[i].familia && arma[i].genus!="")
+			genarr.push(arma[i].genus)
+	}
+	genarr.sort()
+	for (var i=0;i<genarr.length;i++)
+	{
+		if(i==0)
+		{
+			gensel.innerHTML+="<option>"+genarr[0]+"</option>"
+			continue
+		}
+		if(genarr[i]!=genarr[i-1])
+			gensel.innerHTML+="<option>"+genarr[i]+"</option>"
+	}
+	//genspe() // ...and here we go
+	armageddon() // Populate the map with monsters...
+}
+function genspe()
+{
+	spesel.innerHTML="<option>ALL</option>"
+	var spearr=[]
+	for (var i=0;i<arma.length-1;i++)
+	{
+		if(gensel.value==arma[i].genus && arma[i].specie!="")
+			spearr.push(arma[i].specie)
+	}
+	spearr.sort()
+	for (var i=0;i<spearr.length;i++)
+	{
+		if(i==0)
+		{
+			spesel.innerHTML+="<option>"+spearr[0]+"</option>"
+			continue
+		}
+		if(spearr[i]!=spearr[i-1])
+			spesel.innerHTML+="<option>"+spearr[i]+"</option>"
+	}
+	armageddon() // Populate the map with monsters...
+}
+function armageddon()
+{
+	var speval=document.getElementById("spe").value
+	var genval=document.getElementById("gen").value
+	var famval=document.getElementById("fam").value
+	var ordval=document.getElementById("ord").value
+	var claval=document.getElementById("cla").value
+	var phyval=document.getElementById("phy").value
+	var regval=document.getElementById("reg").value
+	var a=[]
+	if(speval!="ALL")
+	{
+		for(var i=0;i<arma.length-1;i++)
+			if(arma[i].specie==speval && arma[i].genus==genval) // Check genus because of unknown "sp."
+				a.push(arma[i])
+	}
+	else if(genval!="ALL")
+	{
+		for(var i=0;i<arma.length-1;i++)
+			if(arma[i].genus==genval)
+				a.push(arma[i])
+	}
+	else if(famval!="ALL")
+	{
+		for(var i=0;i<arma.length-1;i++)
+			if(arma[i].familia==famval)
+				a.push(arma[i])
+	}
+	else if(ordval!="ALL")
+	{
+		for(var i=0;i<arma.length-1;i++)
+			if(arma[i].ordo==ordval)
+				a.push(arma[i])
+	}
+	else if(claval!="ALL")
+	{
+		for(var i=0;i<arma.length-1;i++)
+			if(arma[i].classis==claval)
+				a.push(arma[i])
+	}
+	else if(phyval!="ALL")
+	{
+		for(var i=0;i<arma.length-1;i++)
+			if(arma[i].phylum==phyval)
+				a.push(arma[i])
+	}
+	else if(regval!="ALL")
+	{
+		for(var i=0;i<arma.length-1;i++)
+			if(arma[i].regnum==regval)
+				a.push(arma[i])
+	}
+	else // Regnum: ALL
+	{
+		for(var i=0;i<arma.length-1;i++)
+			a.push(arma[i])
+	}
+	icongeddon(a)
+}
+function buggy()
+{
+	var p=[]
+	for(var i=0;i<arma.length-1;i++)
+	{
+		if(arma[i].regnum==""||
+	     arma[i].phylum==""||
+	     arma[i].classis==""||
+	     arma[i].ordo==""||
+	     arma[i].familia==""||
+	     arma[i].genus=="")
+		  p.push(arma[i])
+	}
+	icongeddon(p)
+}
+function plostenkoidy()
+{
+	var p=[]
+	for(var i=0;i<arma.length-1;i++)
+	{
+		if(arma[i].phylum=="Platyhelminthes")
+			p.push(arma[i])
+	}
+	icongeddon(p)
+}
+function icongeddon(a)
+{
+	//alert(a.length) // #thingies to show in the map'
+	while(map.popups.length)
+		map.removePopup(map.popups[0])
+	vectorLayerDynamic.destroyFeatures()
+	var bylo="" // Minula pozice
+	var sam="" // HTML samostatneho zaznamu
+	var osam="" // predchozi $sam
+	var spoj="" // HTML had z popisu stejnych pozic
+	var ospoj="" // Predchozi spoj
+	var ox="" // Old X
+	var oy="" // Old Y
+	var datelog="" // Entries sorted by date for plaintext log
+	var i=0 // Iterator over a[] (needed after FOR)
+	var n=[] // New points in the layer
+	var muchicons=0 // How much Regnum's?
+	var samicon=ICON_biohazard // Icon
+	var spojicon=ICON_biohazard // Icon
+	for(;i<a.length;i++) // -1 fix for last empty entry
+	{
+		// Pokracujem v hadovi
+		if(a[i].locus == bylo)
+		{
+			sam="";
+			spoj+="<tr><td>"
+			spoj+='<a href="./det/'+a[i].detid+'.htm" target="_blank">'
+			if(a[i].obr != "")
+				spoj+='<img src="./simg/'+a[i].obr+'" class="hadimg"></a></td>'
+			else
+				spoj+='<img src=./"'+ICON_biohazard+'" class="hadimg"></a></td>'
+			spoj+="<td>"+a[i].qualis+"<br>"+a[i].quando+"</td>"
+			spoj+="</tr>"
+			ox=a[i].x
+			oy=a[i].y
+			continue;
+		}
+		if(a[i].specie=="sp.")
+			wikisp="https://en.wikipedia.org/wiki/"+a[i].genus
 		else
-			detpg="$detpg<img src=\"../$3\" alt=\"video\" class='detimg'>"
+			wikisp="https://en.wikipedia.org/wiki/"+a[i].genus+" "+a[i].specie
-		fi
-	fi
-	detpg="$detpg</td></tr></table>"
-	detpg="$detpg</body></html>"
-	echo "$detpg" > "./det/$detid.htm"
-	# Pokracujem v hadovi
+		// Bud prvni zaznam, nebo zmena pozice
-	if [[ "$kde" = "$bylo" ]]; then
-		sam="";
+		// Predchozi pozice jen 1 zaznam?
-		spoj="$spoj<tr><td><a href=\"./det/$detid.htm\" target=\"_blank\">"
+		if(sam != "")
-		if [[ "$obr" != "" ]]; then
+		{
-			spoj="$spoj<img src=\"./simg/$obr\" class=\"hadimg\"></a></td>"
+			samicon=geticon(a,i-1)
+			n[i] = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point(ox,oy).transform(epsg4326,projectTo),{'description':sam},{'externalGraphic':samicon,'graphicHeight':24,'graphicWidth':24,'graphicXOffset':-12,'graphicYOffset':-12});
+			vectorLayerDynamic.addFeatures(n[i]);
+			spoj=""
+			sam=""
+		} // ELSE vytvori prazdny radek
+		// Predchozi pozice vic zaznamu?
+		if(spoj!="")
+		{
+			spojicon=geticon(a,i-1)
+			n[i] = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point(ox,oy).transform(epsg4326,projectTo),{'description':"<table class=\"hadtbl\">"+spoj+"</table>"},{'externalGraphic':spojicon,'graphicHeight':24,'graphicWidth':24,'graphicXOffset':-12,'graphicYOffset':-12});
+			vectorLayerDynamic.addFeatures(n[i]);
+			spoj=""
+			sam=""
+		}
+		bylo=a[i].locus
+		spoj='<tr><td><a href="./det/'+a[i].detid+'.htm" target="_blank">'
+		if(a[i].obr != "")
+			spoj+='<img src="./simg/'+a[i].obr+'" class="hadimg"></a></td>'
 		else
-			spoj="$spoj<img src=\"./$3\" class=\"hadimg\"></a></td>"
+			spoj+='<img src="./'+geticon(a,i)+'" class="hadimg"</a></td>'
-		fi
+		spoj+='<td>'+a[i].qualis+'<br>'+a[i].quando+'</td>'
-		spoj="$spoj<td>$co<br>$kdy</td>"
+		spoj+="</tr>"
-		spoj="$spoj</tr>"
-		ox="$kdex"
-		oy="$kdey"
-		continue;
-	fi
-	# Bud prvni zaznam, nebo zmena pozice
-	# Predchozi pozice jen 1 zaznam?
+		sam='<a href="./det/'+a[i].detid+'.htm" target="_blank"><img src="./simg/'+a[i].obr+'" alt="'+a[i].qualis+'" class="buttimg"></a>'
-	if [[ "$sam" != "" ]]; then
+		sam+='<br><span class="butttext">'
-		echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($ox,$oy).transform(epsg4326,projectTo),{description:'"$sam"'},{externalGraphic:'./$3',graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12});"
+		sam+='<b>Qualis:</b> <a href="'+wikisp+'" target="_blank">'+a[i].qualis+'</a><br>'
-		echo "$2.addFeatures(n$i);"
+		if(a[i].imperium != "")
-		spoj=""
+			sam+='<b>Imperium:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].imperium+'" target="_blank">'+a[i].imperium+'</a><br>'
-		sam=""
+		if(a[i].regnum != "")
-	fi # ELSE vytvori prazdny radek
+    	sam+='<b>Regnum:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].regnum+'" target="_blank">'+a[i].regnum+'</a><br>'
-	# Predchozi pozice vic zaznamu?
+		if(a[i].phylum != "")
-	if [[ "$spoj" != "" ]]; then
+			sam+='<b>Phylum:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].phylum+'" target="_blank">'+a[i].phylum+'</a><br>'
-		echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($ox,$oy).transform(epsg4326,projectTo),{description:'<table class=\"hadtbl\">"$spoj"</table>'},{externalGraphic:'./$3',graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12});"
+		if(a[i].classis != "")
-    echo "$2.addFeatures(n$i);"
+			sam+='<b>Classis:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].classis+'" target="_blank">'+a[i].classis+'</a><br>'
-		spoj=""
+		if(a[i].ordo != "")
-		sam=""
+			sam+='<b>Ordo:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].ordo+'" target="_blank">'+a[i].ordo+'</a><br>'
-	fi
+		if(a[i].familia != "")
+			sam+='<b>Familia:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].familia+'" target="_blank">'+a[i].familia+'</a><br>'
+		if(a[i].genus != "")
+			sam+='<b>Genus:</b> <a href="https://en.wikipedia.org/wiki/'+a[i].genus+'" target="_blank">'+a[i].genus+'</a><br>'
+		if(a[i].specie != "")
+			sam+='<b>Specie:</b> <a href="'+wikisp+'" target="_blank">'+a[i].specie+'</a><br>'
+		if(a[i].bio != "")
+			sam+="<b>Biotope:</b> "+a[i].bio+"<br>"
+		if(a[i].quando != "")
+			sam+="<b>Quando:</b> "+a[i].quando+"<br>"
+		sam+="<b>Locus:</b> "+a[i].locus+" ("+a[i].locplain+")<br>"
+		if(a[i].spec != "")
+ 			sam+="<b>Spectator:</b> "+a[i].spec+"<br>"
+		if(a[i].micro != "")
+			sam+="<b>Microscopium:</b> "+a[i].micro+" ("+a[i].microtyp+")<br>"
+		if(a[i].amp != "")
+			sam+="<b>Amplificatio:</b> "+a[i].amp+"<br>"
+		/* if [[ "$des" != "" ]]; then
+		#   sam="$sam<b>Depictio:</b> $des<br>"
+		# fi */
+		if(a[i].vid != "")
+			sam+='<b>Video:</b> <a href="'+a[i].vid+'" target="_blank">'+a[i].vid+'</a><br>'
+		sam+="</span>"
-	bylo="$kde"
+		ox=a[i].x
-	spoj="<tr><td><a href=\"./det/$detid.htm\" target=\"_blank\">"
+		oy=a[i].y
-	if [[ "$obr" != "" ]]; then
+	} // Konec prochazeni a[]
-		spoj="$spoj<img src=\"./simg/$obr\" class=\"hadimg\"></a></td>"
-	else
-		spoj="$spoj<img src=\"./$3\" class=\"hadimg\"</a></td>"
-	fi
-	spoj="$spoj<td>$co<br>$kdy</td>"
-	spoj="$spoj</tr>"
-	sam="<a href=\"./det/$detid.htm\" target=\"_blank\"><img src=\"./simg/$obr\" alt=\"$co\" class=\"buttimg\"></a>"
+	// Do not forget to print last line when FOR ends!
-	sam="$sam<br><span class=\"butttext\"><b>Qualis:</b> $co<br>"
+	samicon=geticon(a,i-1)
-	if [[ "$imp" != "" ]]; then
+	if(sam == "")
-		sam="$sam<b>Imperium:</b> $imp<br>"
+		sam='<table style="hadtbl">'+spoj+'</table>'
-	fi
-	if [[ "$reg" != "" ]]; then
-		sam="$sam<b>Regnum:</b> $reg<br>"
-	fi
-	if [[ "$phy" != "" ]]; then
-		sam="$sam<b>Phylum:</b> $phy<br>"
-	fi
-	if [[ "$cla" != "" ]]; then
-		sam="$sam<b>Classis:</b> $cla<br>"
-	fi
-	if [[ "$ord" != "" ]]; then
-		sam="$sam<b>Ordo:</b> $ord<br>"
-	fi
-	if [[ "$fam" != "" ]]; then
-		sam="$sam<b>Familia:</b> $fam<br>"
-	fi
-	if [[ "$gen" != "" ]]; then
-		sam="$sam<b>Genus:</b> $gen<br>"
-	fi
-	if [[ "$spe" != "" ]]; then
-		sam="$sam<b>Specie:</b> $spe<br>"
-	fi
-	if [[ "$bio" != "" ]]; then
-		sam="$sam<b>Biotope:</b> $bio<br>"
-	fi
-	if [[ "$kdy" != "" ]]; then
-		sam="$sam<b>Quando:</b> $kdy<br>"
-	fi
-	sam="$sam<b>Locus:</b> $kde ($loc)<br>"
-	if [[ "$obs" != "" ]]; then
-		sam="$sam<b>Spectator:</b> $obs<br>"
-	fi
-	if [[ "$skop" != "" ]]; then
-		sam="$sam<b>Microscopium:</b> $skop ($skop_typ)<br>"
-	fi
-	if [[ "$eng" != "" ]]; then
-		sam="$sam<b>Amplificatio:</b> $eng<br>"
-	fi
-#	if [[ "$des" != "" ]]; then
-#		sam="$sam<b>Depictio:</b> $des<br>"
-#	fi
-	if [[ "$vid" != "" ]]; then
-		sam="$sam<b>Video:</b> <a href=\"$vid\" target=\"_blank\">$vid</a><br>"
-	fi
-	sam="$sam</span>"
-	#>&2 echo "$sam"
+	n[i]=new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point(a[i-1].x,a[i-1].y).transform(epsg4326,projectTo),{description:"'"+sam+"'"},{externalGraphic:samicon,graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12});
-	>&2 echo "$co $obs"
+	vectorLayerDynamic.addFeatures(n[i]);
+} // Konec armageddonu
-	ox="$kdex"
+var laycon = [vectorLayer,vectorLayerDynamic,studlay];
-	oy="$kdey"
+var controls = {selector: new OpenLayers.Control.SelectFeature(laycon, { onSelect: createPopup, onUnselect: destroyPopup })};
+map.addControl(controls['selector']);
+controls['selector'].activate();
-	i=$(($i+1))
+function createPopup(feature)
+{
+	feature.popup = new OpenLayers.Popup.FramedCloud('pop',
+		feature.geometry.getBounds().getCenterLonLat(),
+		null,
+		'<div class="markerContent">'+feature.attributes.description+'</div>',
+		null,
+		false, // Close button?
+		function() { controls['selector'].unselectAll(); }
+	);
+	//feature.popup.closeOnMove = true;
+	map.addPopup(feature.popup);
+}
-	# Precti XML, vyfiltruj jen to co ma prijit do mapy a serad to dle umisteni
+function destroyPopup(feature) {
-	#  Umisteni je razene kvuli vic vzorkum z jednoho mista
+	feature.popup.destroy();
+	feature.popup = null;
+}
-done <<< $(echo "$1") # Zere parametr spaget, nikoli $1 scriptu !!!
+// Run armageddon on initial load
+armageddon()
+</code>
-# Do not forget to print last line when WHILE ends!
+==== Springs ====
-if [[ "$sam" = "" ]]; then
-	sam="<table style=\"hadtbl\">$spoj</table>"
-fi
-echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($kdex,$kdey).transform(epsg4326,projectTo),{description:'"$sam"'},{externalGraphic:'./$3',graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12});"
-echo "$2.addFeatures(n$i);"
-} # KONEC FCE SPAGETY !!!
+To be able to better plan routes for collecting planarians, the knowledge of locations of springs seems to be important. So BioOSM can show them! Below is a script to get the locations from OSM XMLs obtainable from [[http://osm.kyblsoft.cz/archiv/]].
-echo "var ALL = new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href=\"http://brmlab.cz\">Brmlab</a>'});"
+<code bash studanky.sh>
-spagety "$praseTC" "ALL" "biohazard.svg"
+#!/bin/bash
-echo "map.addLayer(ALL);"
+# generate BioOSM compatible "springs"
+# Usage: studanky.sh osmdump.xml
+#
+# Download OSM file to be passed as $1
+# wget "http://osm.kyblsoft.cz/archiv/czech_republic-2019-11-03.osm.gz"
+# gzip -kd ./czech_republic-2019-11-03.osm.gz
+#
+# Pozor ^^ sezere spoustu rameti
+#
-echo "var laycon = [vectorLayer,ALL];" # Layer controls JS array
+osm=$(cat "$1" | sed -e 's/<node/\'$'\a<node/g' -e 's/<\/node>/<\/node\'$'\a/g' -e 's/<way/\'$'\a<way/g' -e 's/<\/way>/<\/way>\'$'\a/g' -e 's/<relation/\'$'\a<relation/g' -e 's/<\/relation>/<\/relation>\'$'\a/g' | tr -d '\n' | tr '\a' '\n' | grep 'v="spring"' | grep 'k="natural"')
-while IFS='' read -r spag || [[ -n "$spag" ]]; do
-	echo "var $spag = new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href=\"http://brmlab.cz\">Brmlab</a>'});"
-	spg=$(echo "$praseTC" | grep "<new-field-4>$spag</new-field-4>")
-	case "$spag" in
-		"Animalia")
-			icon="animalia.png";;
-		"Bacteria")
-			icon="bacteria.png";;
-		"Fungi")
-			icon="fungi.png";;
-		"Chromista")
-			icon="chromista.png";;
-		"Plantae")
-			icon="plantae.svg";;
-		"Protista")
-			icon="protista.png";;
-		*)
-			icon="biohazard.svg";;
-	esac
-	spagety "$spg" "$spag" "$icon"
+json='{"version":"'$(date --rfc-3339=seconds)'","std":['
-	echo "laycon.push($spag);"
-done <<< $(echo "$kingdoms")
-# Plostenky
+while IFS='' read -r spr || [[ -n "$spr" ]]; do
-spg=$(echo "$praseTC" | grep "<phylum>Platyhelminthes</phylum>")
+	n=$(echo "$spr" | grep -oPe 'k="name" v="[^"]*"' | sed -e 's/k="name" v="//g' -e 's/"$//g')
-echo "var Platyhelminthes = new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href=\"http://brmlab.cz\">Brmlab</a>'});"
+	lat=$(echo "$spr" | grep -oPe ' lat="[^"]*"' | sed -e 's/ lat="//g' -e 's/"$//g')
-spagety "$spg" "Platyhelminthes" "plostenkoid.png"
+	lon=$(echo "$spr" | grep -oPe ' lon="[^"]*"' | sed -e 's/ lon="//g' -e 's/"$//g')
-echo "laycon.push(Platyhelminthes)"
+	if [ "$lat" = "" ] || [ "$lon" = "" ]; then
+		continue; # <way> a tak
+	fi
+	if [[ "$n" = "" ]]; then
+		n="inkognito"
+		>&2 echo -e "\033[34m $lat $lon \033[0m";
+	fi
-echo "var controls = {"
+	json+="{"
-echo "	selector: new OpenLayers.Control.SelectFeature(laycon, { onSelect: createPopup, onUnselect: destroyPopup })"
+	json+=" \"name\":\"$n\","
-echo "};"
+	json+=" \"lon\":\"$lon\","
-echo "map.addControl(controls['selector']);"
+	json+=" \"lat\":\"$lat\""
-echo "controls['selector'].activate();"
+	json+="},"
+	>&2 echo -e "\033[32m $n $lat $lon\033[0m"
+done <<< $(echo "$osm")
+echo "$json{}]}"
+</code>
+=== LocalityID ===
+<code bash ajdy.sh>
+#!/bin/bash
-echo "function createPopup(feature) {"
+T=$(mktemp)
-	echo "	feature.popup = new OpenLayers.Popup.FramedCloud('pop',"
+unzip -p "$1" tellico.xml | tr -d '\n' | sed -e $'s/<entry id="/\\\n<entry id="/g' -e $'s/<\/entry>/<\/entry>\\\n/g' > "$T"
-		echo "		feature.geometry.getBounds().getCenterLonLat(),"
-		echo "		null,"
-		echo "		'<div class=\"markerContent\">'+feature.attributes.description+'</div>',"
-		echo "		null,"
-		echo "		false,"
-		echo "		function() { controls['selector'].unselectAll(); }"
-	echo "	);"
-	echo "	//feature.popup.closeOnMove = true;"
-	echo "	map.addPopup(feature.popup);"
-echo "}"
-echo "function destroyPopup(feature) {"
-	echo "	feature.popup.destroy();"
-	echo "	feature.popup = null;"
-echo "}"
+hf=$(cat "$T" | grep -Pe '^<entry id="' | grep '<hasflatworms>yep</hasflatworms>')
+# nejvyssi dosazene ID
+mid=$(cat "$T" | grep -Pe '^<entry id="' | grep -oe ' <localityid>.*</localityid> ' | grep -oPe '[0-9]+' | sort | tail -n 1)
+mid=$(($mid+1))
-echo "function kinchange() {"
-	echo "	kinsel=document.getElementById('kin');"
-	echo "	kinopt=kinsel.options[kinsel.selectedIndex].text;"
-	echo "	for (var i = map.layers.length - 1; i >= 1; i--) {"
-	echo "		map.removeLayer(map.layers[i]);"
-	echo "	}"
-	echo "	map.addLayer(window[kinopt])"
-echo "}"
-echo "function plostenkoid() {"
+function ll()
-	echo "	for (var i=map.layers.length-1;i>=1;i--) {"
+{
-	echo "		map.removeLayer(map.layers[i]);"
+	while IFS='' read -r r || [[ -n "$r" ]]; do
-	echo "	}"
+		t=$(echo "$r" | grep -oe ' <taken-date>.*</taken-date> ' | sed -E 's/( )*<(\/)?taken-date>( )*//g' | sed -E 's/([0-9]+)\.([0-9]+)\.([0-9]{4})/\3-\2-\1/g' | sed -E 's/-([0-9])-/-0\1-/g' | sed -E 's/-([0-9])$/-0\1/g')
-	echo "	map.addLayer(Platyhelminthes)"
+		l=$(echo "$r" | grep -oe '<locality>.*</locality>' | grep -oPe '[0-9]+\.[0-9]+[, ]*[0-9]+\.[0-9]+')
-echo "}"
+		 echo "$t@$l"
+	done <<< $(echo "$1")
+}
+srt=$(ll "$hf" | sort -u)
-echo "</script>"
+uid=$mid
-echo "</html>"
+while IFS='' read -r r || [[ -n "$r" ]]; do
+	l=$(echo "$r" | grep -oPe '@.*$' | tr -d '@')
+	lid=$(cat "$T" | grep  " <locality>$l</locality> " | grep -oe ' <localityid>.*</localityid> ' | grep -oPe '[0-9]+')
+	if [[ "$lid" = "" ]]; then
+		sedexp="s/( <locality>$l<\/locality> .*<hasflatworms>yep<\/hasflatworms> )/ \\1 <localityid>$uid<\/localityid> /g"
+		#echo "$sedexp"
+		sed -E "$sedexp" -i "$T"
+		uid=$(($uid+1))
+	fi
+done <<< $(echo "$srt")
+D=$(mktemp -d)
+cp -f "$T" "$D/tellico.xml"
+zip -j "./micro_new.tc" "$D/tellico.xml"
+rm -rfv "$T"
+rm -rfv "$D"
 </code>