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project:bioosm:start [2018/06/07 19:40] – sumie-dhproject:bioosm:start [2018/07/12 09:51] – Ruzne ikony i pro celkovou mapu sachy
Line 3: Line 3:
 {{template>:project:infobox| {{template>:project:infobox|
 name=Biologicke zbrane ve vasem okoli| name=Biologicke zbrane ve vasem okoli|
-image= bioosm:bioosm.jpg?200 |+image= bioosm:bioosm.jpg?400 |
 founder=[[user:sachy:start]]| founder=[[user:sachy:start]]|
-interested=[[user:sumie]]|+interested=[[user:sumie-dh]]|
 sw=CC| sw=CC|
 hw=N/A| hw=N/A|
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 [[http://brmlab.s0c4.net/bioosm/|BioOSM]] je mapa vyskytu mikroorganismu (ras, bakterii, plostenek, ...) a do budoucna i dalsich prirodnin (mineralu, ...). [[http://brmlab.s0c4.net/bioosm/|BioOSM]] je mapa vyskytu mikroorganismu (ras, bakterii, plostenek, ...) a do budoucna i dalsich prirodnin (mineralu, ...).
 +
 +==== K cemu to je ====
 +
 +  *  interaktivni mapa vhodna k zobrazovani vetsiho mnozstvi fotek, brmlabi wiki, sluzby typu phtagr a soup se zdaly nevhodne k publikaci tohoto typu obsahu, wiki by byla prilis obludna, na beznych sdilecich obrazkovych sluzbach se neda nic pohodlne dohledavat a davat tam biologicky smysluplne a prehledne popisky
 +  *  monitoring zivocichu a rostlin podle zajmu prispevovatelu 
 +  *  snadne klikaci katalogovani nalezu skrze Tellico nevyzadujici coding skills
 +  *  TODO - jednoduche selekce zajmoveho okruhu subjektu [napr. podle rodu, biotopu, datumu] na mape
 +  * procvicovani temne magie commandu grep, sed a regexpu
  
 ==== Jak to funguje ==== ==== Jak to funguje ====
Line 89: Line 97:
  
 ==== parse_tellico.sh ==== ==== parse_tellico.sh ====
-<code bash>+<code bash parse_tellico.sh>
 #!/bin/bash #!/bin/bash
 # Parse Tellico database to BioOSM index.htm # Parse Tellico database to BioOSM index.htm
Line 95: Line 103:
 # Print result to stdout # Print result to stdout
 # #
-# Generate minis in simg folder 
 # find ./ -type f -exec mogrify -verbose -layers Dispose -resize 128\>x128\> -quality 100% {} + # find ./ -type f -exec mogrify -verbose -layers Dispose -resize 128\>x128\> -quality 100% {} +
 # #
 +# // vectorLayer.removeFeatures(atol)
 +# // map.removeLayer(vectorLayer)
 # #
 # #
Line 104: Line 113:
 #   ./det/ID.htm details of each and every entry #   ./det/ID.htm details of each and every entry
 # #
 +
 +ICON_animalia="animalia.png"
 +ICON_bacteria="bacteria.png"
 +ICON_fungi="fungi.png"
 +ICON_chromista="chromista.png"
 +ICON_plantae="plantae.svg"
 +ICON_plostenkoid="plostenkoid.png"
 +ICON_protista="protista.png"
 +ICON_biohazard="biohazard.svg"
 +
 +# Return icon by Regnum
 +function geticon () {
 + case "$1" in
 + "Animalia")
 + echo $ICON_animalia;;
 + "Bacteria")
 + echo $ICON_bacteria;;
 + "Fungi")
 + echo $ICON_fungi;;
 + "Chromista")
 + echo $ICON_chromista;;
 + "Plantae")
 + echo $ICON_plantae;;
 + "Protista")
 + echo $ICON_protista;;
 + *)
 + echo $ICON_biohazard;;
 + esac
 +}
 +
  
 rm -rfv "./det/*" rm -rfv "./det/*"
Line 120: Line 159:
 echo '<head>' echo '<head>'
 echo ' <meta http-equiv="Content-Type" content="text/html; charset=utf-8">' echo ' <meta http-equiv="Content-Type" content="text/html; charset=utf-8">'
-echo ' <title>BioOSM</title>'+echo ' <title>brmlab - BioOSM</title>'
 echo ' <link rel="stylesheet" href="./style.css" type="text/css">' echo ' <link rel="stylesheet" href="./style.css" type="text/css">'
 +echo ' <link rel="favicon" href="./'$ICON_biohazard'">'
 echo ' <script src="./OpenLayers.js"></script>' echo ' <script src="./OpenLayers.js"></script>'
 echo '</head>' echo '</head>'
  
 echo "<body>" echo "<body>"
- echo "<h1 id='title'>BioOSM - armis biologica in tuis vicinia</h1>"+ echo "<h1 id='title'>BioOSM - arma biologica in tuis vicinia</h1>"
  
  # Generate select  # Generate select
Line 277: Line 317:
  detpg="$detpg<b>Video:</b> <a href=\"$vid\" target=\"_blank\">$vid</a><br>"  detpg="$detpg<b>Video:</b> <a href=\"$vid\" target=\"_blank\">$vid</a><br>"
  fi  fi
- detpg="$detpg</td><td>"+ detpg="$detpg</td><td style='min-width:66%'>"
  if [[ "$obr" != "" ]]; then  if [[ "$obr" != "" ]]; then
  detpg="$detpg<a href=\"../img/$obr\"><img src=\"../img/$obr\" alt=\"$co\" class='detimg'></a>"  detpg="$detpg<a href=\"../img/$obr\"><img src=\"../img/$obr\" alt=\"$co\" class='detimg'></a>"
Line 302: Line 342:
  fi  fi
  spoj="$spoj<td>$co<br>$kdy</td>"  spoj="$spoj<td>$co<br>$kdy</td>"
 + spoj="$spoj<!-- $reg -->"
  spoj="$spoj</tr>"  spoj="$spoj</tr>"
  ox="$kdex"  ox="$kdex"
Line 312: Line 353:
  # Predchozi pozice jen 1 zaznam?  # Predchozi pozice jen 1 zaznam?
  if [[ "$sam" != "" ]]; then  if [[ "$sam" != "" ]]; then
- echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($ox,$oy).transform(epsg4326,projectTo),{description:'"$sam"'},{externalGraphic:'./$3',graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12});"+ samicon=$(geticon $(echo "$sam" | grep -oPe "<b>Regnum:</b> [a-zA-Z0-9]*" | grep -oPe "[a-zA-Z0-9]*$")) 
 + >&2 echo "$samicon" 
 + 
 + echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($ox,$oy).transform(epsg4326,projectTo),{description:'"$sam"'},{externalGraphic:'./$samicon',graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12});"
  echo "$2.addFeatures(n$i);"  echo "$2.addFeatures(n$i);"
  spoj=""  spoj=""
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  # Predchozi pozice vic zaznamu?  # Predchozi pozice vic zaznamu?
  if [[ "$spoj" != "" ]]; then  if [[ "$spoj" != "" ]]; then
- echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($ox,$oy).transform(epsg4326,projectTo),{description:'<table class=\"hadtbl\">"$spoj"</table>'},{externalGraphic:'./$3',graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12});"+ muchicons=$(echo "$spoj" | grep -oPe "<!-- [a-zA-Z0-9]* -->" | grep -oPe "[a-zA-Z0-9]*" | sort | uniq | wc -l) 
 + #>&2 echo "*** $muchicons" 
 + if [[ "$muchicons" == "1" ]]; then 
 + spojicon=$(geticon $(echo "$spoj" | grep -oPe "<!-- [a-zA-Z0-9]* -->" | grep -oPe "[a-zA-Z0-9]*" | sort | uniq)) 
 + #>&2 echo "*** $spojicon" 
 + else 
 + spojicon=$ICON_biohazard 
 + fi 
 + echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($ox,$oy).transform(epsg4326,projectTo),{description:'<table class=\"hadtbl\">"$spoj"</table>'},{externalGraphic:'./$spojicon',graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12});"
     echo "$2.addFeatures(n$i);"     echo "$2.addFeatures(n$i);"
  spoj=""  spoj=""
Line 333: Line 385:
  fi  fi
  spoj="$spoj<td>$co<br>$kdy</td>"  spoj="$spoj<td>$co<br>$kdy</td>"
 + spoj="$spoj<!-- $reg -->" # Metadata pyco
  spoj="$spoj</tr>"  spoj="$spoj</tr>"
  
Line 402: Line 455:
 # Do not forget to print last line when WHILE ends! # Do not forget to print last line when WHILE ends!
 if [[ "$sam" = "" ]]; then if [[ "$sam" = "" ]]; then
 + muchicons=$(echo "$spoj" | grep -oPe "<!-- [a-zA-Z0-9]* -->" | grep -oPe "[a-zA-Z0-9]*" | sort | uniq | wc -l)
 + if [[ "$muchicons" == "1" ]]; then
 + samicon=$(geticon $(echo "$spoj" | grep -oPe "<!-- [a-zA-Z0-9]* -->" | grep -oPe "[a-zA-Z0-9]*" | sort | uniq))
 + else
 + samicon=$ICON_biohazard
 + fi
  sam="<table style=\"hadtbl\">$spoj</table>"  sam="<table style=\"hadtbl\">$spoj</table>"
 +else
 + samicon=$(geticon $(echo "$sam" | grep -oPe "<b>Regnum:</b> [a-zA-Z0-9]*" | grep -oPe "[a-zA-Z0-9]*$"))
 fi fi
-echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($kdex,$kdey).transform(epsg4326,projectTo),{description:'"$sam"'},{externalGraphic:'./$3',graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12});"+echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($kdex,$kdey).transform(epsg4326,projectTo),{description:'"$sam"'},{externalGraphic:'./$samicon',graphicHeight:24,graphicWidth:24,graphicXOffset:-12,graphicYOffset:-12});"
 echo "$2.addFeatures(n$i);" echo "$2.addFeatures(n$i);"
  
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 echo "var ALL = new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href=\"http://brmlab.cz\">Brmlab</a>'});" echo "var ALL = new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href=\"http://brmlab.cz\">Brmlab</a>'});"
-spagety "$praseTC" "ALL" "biohazard.svg"+spagety "$praseTC" "ALL" $ICON_biohazard
 echo "map.addLayer(ALL);" echo "map.addLayer(ALL);"
  
Line 417: Line 478:
  echo "var $spag = new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href=\"http://brmlab.cz\">Brmlab</a>'});"  echo "var $spag = new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href=\"http://brmlab.cz\">Brmlab</a>'});"
  spg=$(echo "$praseTC" | grep "<new-field-4>$spag</new-field-4>")  spg=$(echo "$praseTC" | grep "<new-field-4>$spag</new-field-4>")
- case "$spag" in + icon=$(geticon "$spag")
- "Animalia") +
- icon="animalia.png";; +
- "Bacteria") +
- icon="bacteria.png";; +
- "Fungi") +
- icon="fungi.png";; +
- "Chromista") +
- icon="chromista.png";; +
- "Plantae") +
- icon="plantae.svg";; +
- "Protista") +
- icon="protista.png";; +
- *) +
- icon="biohazard.svg";; +
- esac +
  spagety "$spg" "$spag" "$icon"  spagety "$spg" "$spag" "$icon"
  echo "laycon.push($spag);"  echo "laycon.push($spag);"
Line 441: Line 486:
 spg=$(echo "$praseTC" | grep "<phylum>Platyhelminthes</phylum>") spg=$(echo "$praseTC" | grep "<phylum>Platyhelminthes</phylum>")
 echo "var Platyhelminthes = new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href=\"http://brmlab.cz\">Brmlab</a>'});" echo "var Platyhelminthes = new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href=\"http://brmlab.cz\">Brmlab</a>'});"
-spagety "$spg" "Platyhelminthes" "plostenkoid.png"+spagety "$spg" "Platyhelminthes" $ICON_plostenkoid
 echo "laycon.push(Platyhelminthes)" echo "laycon.push(Platyhelminthes)"
  
project/bioosm/start.txt · Last modified: 2023/09/21 12:15 by sachy