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project:bioosm:start [2018/08/27 22:55] – pridan taxonomator sachyproject:bioosm:start [2019/11/12 19:13] – springs sachy
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 name=Biologicke zbrane ve vasem okoli| name=Biologicke zbrane ve vasem okoli|
 image= bioosm:bioosm.jpg?400 | image= bioosm:bioosm.jpg?400 |
-founder=[[user:sachy:start]]|+founder=[[user:sachy]]|
 interested=[[user:sumie-dh]]| interested=[[user:sumie-dh]]|
 sw=CC-BY-SA| sw=CC-BY-SA|
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 ==== K cemu to je ==== ==== K cemu to je ====
  
-  *  interaktivni mapa vhodna k zobrazovani vetsiho mnozstvi fotek, brmlabi wiki, sluzby typu phtagr a soup se zdaly nevhodne k publikaci tohoto typu obsahu, wiki by byla prilis obludna, na beznych sdilecich obrazkovych sluzbach se neda nic pohodlne dohledavat a davat tam biologicky smysluplne a prehledne popisky +  * interaktivni mapa vhodna k zobrazovani vetsiho mnozstvi fotek, brmlabi wiki, sluzby typu phtagr a soup se zdaly nevhodne k publikaci tohoto typu obsahu, wiki by byla prilis obludna, na beznych sdilecich obrazkovych sluzbach se neda nic pohodlne dohledavat a davat tam biologicky smysluplne a prehledne popisky 
-  *  monitoring zivocichu a rostlin podle zajmu prispevovatelu  +  * monitoring zivocichu a rostlin podle zajmu prispevovatelu  
-  *  snadne klikaci katalogovani nalezu skrze Tellico nevyzadujici coding skills +  * snadne klikaci katalogovani nalezu skrze Tellico nevyzadujici coding skills 
-  *  TODO - jednoduche selekce zajmoveho okruhu subjektu [napr. podle rodu, biotopu, datumu] na mape+  * TODO - jednoduche selekce zajmoveho okruhu subjektu [napr. podle rodu, biotopu, datumu] na mape
   * procvicovani temne magie commandu grep, sed a regexpu   * procvicovani temne magie commandu grep, sed a regexpu
  
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 Pro nadsence je vygenerovany taky prehled prispevku plainlog.htm serazeny dle data pridani do databaze. Pro nadsence je vygenerovany taky prehled prispevku plainlog.htm serazeny dle data pridani do databaze.
 +
 +Pokud chcete vedet co je noveho, odebirejte projektovou [[http://brmlab.s0c4.net/bioosm/bioosm.rss|RSS]]
  
 Obrazky v plnem rozliseni jsou v podadresari "img", nahledy v "simg". Videa jsou nahrana na YT a misto nahledu maji generickou ikonu. Obrazky v plnem rozliseni jsou v podadresari "img", nahledy v "simg". Videa jsou nahrana na YT a misto nahledu maji generickou ikonu.
Line 105: Line 107:
 # Print result to stdout # Print result to stdout
 # #
-# find ./ -type f -exec mogrify -verbose -layers Dispose -resize 128\>x128\> -quality 100% {} + +# <iframe width="500" height="500" frameborder="0" scrolling="no" marginheight="0" marginwidth="0" src="https://www.openstreetmap.org/export/embed.html?bbox=14.978000%2C49.990000%2C15.022000%2C50.010000&amp;layer=mapnik&amp;marker=50.000000%2C15.000000"></iframe>
-#+
 # // vectorLayer.removeFeatures(atol) # // vectorLayer.removeFeatures(atol)
 # // map.removeLayer(vectorLayer) # // map.removeLayer(vectorLayer)
Line 112: Line 113:
 # #
 # Creates: # Creates:
-#   (to stdout) index.htm file with the map and static entries+#   (to stdout) HTML file with the map and static entries
 #   ./det/ID.htm details of each and every entry #   ./det/ID.htm details of each and every entry
 +#   ./bioosm.json JSON of all entries
 +#   ./bioosm.rss updated RSS feed
 +#   ./plainlog.htm sorted entries for easy human/alg
 # #
  
Line 129: Line 133:
  
 json="" json=""
 +
 +rss=$'<?xml version="1.0" encoding="UTF-8" ?>\n'
 +rss+=$'<rss version="2.0">\n'
 +rss+=$'<channel>\n'
 +rss+=$'<title>Brmlab BioOSM RSS feed</title>\n'
 +rss+=$'<description>New entries on BioOSM database</description>\n'
 +rss+=$'<link>https://bioosm.s0c4.net</link>\n'
 +rss+=$'<lastBuildDate></lastBuildDate>\n'
 +rss+=$'<pubDate></pubDate>\n'
 +rss+=$'<ttl>86400</ttl>\n'
  
 # Return icon by Regnum # Return icon by Regnum
Line 177: Line 191:
  obr=$(echo "$radek" | grep -oe ' <image>.*</image> ' | sed -E 's/( )*<(\/)?image>( )*//g' | grep -oPe '[^/]*$')  obr=$(echo "$radek" | grep -oe ' <image>.*</image> ' | sed -E 's/( )*<(\/)?image>( )*//g' | grep -oPe '[^/]*$')
  obr=$(safehtml "$obr")  obr=$(safehtml "$obr")
- kde=$(echo "$radek" | grep -oe '<locality>.*</locality>' | grep -oPe '[0-9]{2}\.[0-9]{1,10}[, ]*[0-9]{2}\.[0-9]{1,10}')+ kde=$(echo "$radek" | grep -oe '<locality>.*</locality>' | grep -oPe '[0-9]+\.[0-9]{1,10}[, ]*[0-9]+\.[0-9]{1,10}')
  kde=$(safehtml "$kde")  kde=$(safehtml "$kde")
- kdex=$(echo "$kde" | grep -oPe '[0-9]{2}\.[0-9]{1,10}$')+ kdex=$(echo "$kde" | grep -oPe '[0-9]+\.[0-9]{1,10}$')
  kdex=$(safehtml "$kdex")  kdex=$(safehtml "$kdex")
- kdey=$(echo "$kde" | grep -oPe '^[0-9]{2}\.[0-9]{1,10}')+ kdey=$(echo "$kde" | grep -oPe '^[0-9]+\.[0-9]{1,10}')
  kdey=$(safehtml "$kdey")  kdey=$(safehtml "$kdey")
  kdy=$(echo "$radek" | grep -oe ' <taken-date>.*</taken-date> ' | sed -E 's/( )*<(\/)?taken-date>( )*//g' | sed -E 's/([0-9]+)\.([0-9]+)\.([0-9]{4})/\3-\2-\1/g' | sed -E 's/-([0-9])-/-0\1-/g' | sed -E 's/-([0-9])$/-0\1/g')  kdy=$(echo "$radek" | grep -oe ' <taken-date>.*</taken-date> ' | sed -E 's/( )*<(\/)?taken-date>( )*//g' | sed -E 's/([0-9]+)\.([0-9]+)\.([0-9]{4})/\3-\2-\1/g' | sed -E 's/-([0-9])-/-0\1-/g' | sed -E 's/-([0-9])$/-0\1/g')
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  lnk=$(echo "$radek" | grep -oe ' <localitylink>.*</localitylink> ' | sed -E 's/( )*<(\/)?localitylink>( )*//g')  lnk=$(echo "$radek" | grep -oe ' <localitylink>.*</localitylink> ' | sed -E 's/( )*<(\/)?localitylink>( )*//g')
  lnk=$(safehtml "$lnk")  lnk=$(safehtml "$lnk")
 + har=$(echo "$radek" | grep -oe ' <harvesting-method>.*</harvesting-method> ' | sed -E 's/( )*<(\/)?harvesting-method>( )*//g')
 + den=$(echo "$radek" | grep -oe ' <population-density>.*</population-density> ' | sed -E 's/( )*<(\/)?population-density>( )*//g')
 + dur=$(echo "$radek" | grep -oe ' <min>.*</min> ' | sed -E 's/( )*<(\/)?min>( )*//g')
 + lor=$(echo "$radek" | grep -oe ' <locality-reference>.*</locality-reference> ' | sed -E 's/( )*<(\/)?locality-reference>( )*//g')
 + lrl=$(echo "$radek" | grep -oe ' <locality-reference---link>.*</locality-reference---link> ' | sed -E 's/( )*<(\/)?locality-reference---link>( )*//g')
 + lov=$(echo "$radek" | grep -oe ' <locality---vobrazek>.*</locality---vobrazek> ' | sed -E 's/( )*<(\/)?locality---vobrazek>( )*//g' | grep -oPe '[^/]*$')
 +
 + # >&2 echo "$co - $har - $den - $dur - $lor - $lrl - $lov"
 +
  detid=$(echo "brmlab$co$obr$kde$kdy" | md5sum | grep -oe '[a-zA-Z0-9]*')  detid=$(echo "brmlab$co$obr$kde$kdy" | md5sum | grep -oe '[a-zA-Z0-9]*')
  
  if [[ "$kdex" = "" ]]; then  if [[ "$kdex" = "" ]]; then
- >&2 echo $(echo "$radek" | grep -oe '<locality>.*</locality>') " $co"+ >&2 echo -e "\033[31m" $(echo "$radek" | grep -oe '<locality>.*</locality>') " $co\033[0m"
  continue;  continue;
  fi  fi
  zkurvenetellico=$(echo "$obr" | grep -oe '\.[a-zA-Z]*$')  zkurvenetellico=$(echo "$obr" | grep -oe '\.[a-zA-Z]*$')
  if [[ "$zkurvenetellico" = ".jpeg" ]]; then  if [[ "$zkurvenetellico" = ".jpeg" ]]; then
- >&2 echo "$obr $co"+ >&2 echo -e "\033[31m$obr $co\033[0m"
  continue;  continue;
  fi  fi
Line 237: Line 260:
  fi  fi
  
- json="$json{" + json+="{" 
- json="$json \"qualis\":\"$co\"," + json+=" \"qualis\":\"$co\"," 
- json="$json \"imperium\":\"$imp\"," + json+=" \"imperium\":\"$imp\"," 
- json="$json \"regnum\":\"$reg\"," + json+=" \"regnum\":\"$reg\"," 
- json="$json \"phylum\":\"$phy\"," + json+=" \"phylum\":\"$phy\"," 
- json="$json \"classis\":\"$cla\"," + json+=" \"classis\":\"$cla\"," 
- json="$json \"ordo\":\"$ord\"," + json+=" \"ordo\":\"$ord\"," 
- json="$json \"familia\":\"$fam\"," + json+=" \"familia\":\"$fam\"," 
- json="$json \"genus\":\"$gen\"," + json+=" \"genus\":\"$gen\"," 
- json="$json \"specie\":\"$spe\"," + json+=" \"specie\":\"$spe\"," 
- json="$json \"locus\":\"$kde\"," + json+=" \"locus\":\"$kde\"," 
- json="$json \"x\":\"$kdex\"," + json+=" \"x\":\"$kdex\"," 
- json="$json \"y\":\"$kdey\"," + json+=" \"y\":\"$kdey\"," 
- json="$json \"locplain\":\"$loc\"," + json+=" \"locplain\":\"$loc\"," 
- json="$json \"depictio\":\"$des\"," + json+=" \"depictio\":\"$des\"," 
- json="$json \"quando\":\"$kdy\"," + json+=" \"quando\":\"$kdy\"," 
- json="$json \"obr\":\"$obr\"," + json+=" \"obr\":\"$obr\"," 
- json="$json \"micro\":\"$skop\"," + json+=" \"micro\":\"$skop\"," 
- json="$json \"microtyp\":\"$skop_typ\"," + json+=" \"microtyp\":\"$skop_typ\"," 
- json="$json \"vid\":\"$vid\"," + json+=" \"vid\":\"$vid\"," 
- json="$json \"bio\":\"$bio\"," + json+=" \"bio\":\"$bio\"," 
- json="$json \"amp\":\"$eng\"," + json+=" \"amp\":\"$eng\"," 
- json="$json \"spec\":\"$obs\"," + json+=" \"spec\":\"$obs\"," 
- json="$json \"detid\":\"$detid\"," + json+=" \"detid\":\"$detid\"," 
- json="$json \"lnk\":\"$lnk\"" # Lastone without ',' + json+=" \"har\":\"$har\"," 
- json="$json },"+ json+=" \"den\":\"$den\"," 
 + json+=" \"dur\":\"$dur\"," 
 + json+=" \"lor\":\"$lor\"," 
 + json+=" \"lrl\":\"$lrl\"," 
 + json+=" \"lov\":\"$lov\"," 
 + json+=" \"lnk\":\"$lnk\"" # Lastone without ',' 
 + json+="}," 
 + 
 + 
 + rss+=$'<item>\n' 
 + rss+=$'  <title>'"$co"$'</title>\n' 
 + rss+=$'  <description>'"$des"$'</description>\n' 
 + rss+=$'  <link>http://brmlab.s0c4.net/bioosm/det/'"$detid"$'.htm</link>\n' 
 + rss+=$'  <guid isPermaLink="false">'"$detid"$'</guid>\n' 
 + rss+=$'  <pubDate>'"$kdy"$'</pubDate>\n' 
 + rss+=$'</item>\n'
  
  
Line 268: Line 306:
  detid=$(echo "brmlab$co$obr$kde$kdy" | md5sum | grep -oe '[a-zA-Z0-9]*')  detid=$(echo "brmlab$co$obr$kde$kdy" | md5sum | grep -oe '[a-zA-Z0-9]*')
  detpg="<html><head>"  detpg="<html><head>"
- detpg="$detpg<meta http-equiv='Content-Type' content='text/html; charset=utf-8'>" + detpg+="<meta http-equiv='Content-Type' content='text/html; charset=utf-8'>" 
- detpg="$detpg<link rel='stylesheet' href='../style.css' type='text/css'>" + detpg+="<link rel='stylesheet' href='../style.css' type='text/css'>" 
- detpg="$detpg<title>Brmlab - BioOSM $co $kde</title>" + detpg+="<title>Brmlab - BioOSM $co $kde</title>" 
- detpg="$detpg</head><body>" + detpg+="</head><body>" 
- detpg="$detpg<table class='dettbl'><tr>" + detpg+="<table class='dettbl'><tr>" 
- detpg="$detpg<td><h1>$co (<a href='$wikisp' target='_blank'>wiki</a>)</h1>"+ detpg+="<h1>$co (<a href='$wikisp' target='_blank'>wiki</a>)</h1>" 
 + detpg+="<td style='width:33%;vertical-align:top'>"
  if [[ "$imp" != "" ]]; then  if [[ "$imp" != "" ]]; then
- detpg="$detpg<b>Imperium:</b> <a href='https://en.wikipedia.org/wiki/$imp' target='_blank'>$imp</a><br>"+ detpg+="<b>Imperium:</b> <a href='https://en.wikipedia.org/wiki/$imp' target='_blank'>$imp</a><br>"
  fi  fi
  if [[ "$reg" != "" ]]; then  if [[ "$reg" != "" ]]; then
- detpg="$detpg<b>Regnum:</b> <a href='https://en.wikipedia.org/wiki/$reg' target='_blank'>$reg</a><br>"+ detpg+="<b>Regnum:</b> <a href='https://en.wikipedia.org/wiki/$reg' target='_blank'>$reg</a><br>"
  fi  fi
  if [[ "$phy" != "" ]]; then  if [[ "$phy" != "" ]]; then
- detpg="$detpg<b>Phylum:</b> <a href='https://en.wikipedia.org/wiki/$phy' target='_blank'>$phy</a><br>"+ detpg+="<b>Phylum:</b> <a href='https://en.wikipedia.org/wiki/$phy' target='_blank'>$phy</a><br>"
  fi  fi
  if [[ "$cla" != "" ]]; then  if [[ "$cla" != "" ]]; then
- detpg="$detpg<b>Classis:</b> <a href='https://en.wikipedia.org/wiki/$cla' target='_blank'>$cla</a><br>"+ detpg+="<b>Classis:</b> <a href='https://en.wikipedia.org/wiki/$cla' target='_blank'>$cla</a><br>"
  fi  fi
  if [[ "$ord" != "" ]]; then  if [[ "$ord" != "" ]]; then
- detpg="$detpg<b>Ordo:</b> <a href='https://en.wikipedia.org/wiki/$ord' target='_blank'>$ord</a><br>"+ detpg+="<b>Ordo:</b> <a href='https://en.wikipedia.org/wiki/$ord' target='_blank'>$ord</a><br>"
  fi  fi
  if [[ "$fam" != "" ]]; then  if [[ "$fam" != "" ]]; then
- detpg="$detpg<b>Familia:</b> <a href='https://en.wikipedia.org/wiki/$fam' target='_blank'>$fam</a><br>"+ detpg+="<b>Familia:</b> <a href='https://en.wikipedia.org/wiki/$fam' target='_blank'>$fam</a><br>"
  fi  fi
  if [[ "$gen" != "" ]]; then  if [[ "$gen" != "" ]]; then
- detpg="$detpg<b>Genus:</b> <a href='https://en.wikipedia.org/wiki/$gen' target='_blank'>$gen</a><br>"+ detpg+="<b>Genus:</b> <a href='https://en.wikipedia.org/wiki/$gen' target='_blank'>$gen</a><br>"
  fi  fi
  if [[ "$spe" != "" ]]; then  if [[ "$spe" != "" ]]; then
- detpg="$detpg<b>Specie:</b> <a href='$wikisp' target='_blank'>$spe</a><br>"+ detpg+="<b>Specie:</b> <a href='$wikisp' target='_blank'>$spe</a><br>"
  fi  fi
- detpg="$detpg<br>"+ detpg+="<br>"
  if [[ "$kdy" != "" ]]; then  if [[ "$kdy" != "" ]]; then
- detpg="$detpg<b>Quando:</b> $kdy<br>"+ detpg+="<b>Quando:</b> $kdy<br>"
  fi  fi
  if [[ "$lnk" != "" ]]; then  if [[ "$lnk" != "" ]]; then
  loc="<a href=\"$lnk\" target=\"_blank\">$loc</a>" # Yes, escaped "  loc="<a href=\"$lnk\" target=\"_blank\">$loc</a>" # Yes, escaped "
  fi  fi
- detpg="$detpg<b>Locus:</b> $kde ($loc)<br>"+ detpg+="<b>Locus:</b> $kde ($loc)<br>"
  if [[ "$obs" != "" ]]; then  if [[ "$obs" != "" ]]; then
- detpg="$detpg<b>Spectator:</b> $obs<br>"+ detpg+="<b>Spectator:</b> $obs<br>"
  fi  fi
  if [[ "$bio" != "" ]]; then  if [[ "$bio" != "" ]]; then
- detpg="$detpg<b>Biotope:</b> $bio<br>"+ detpg+="<b>Biotope:</b> $bio<br>"
  fi  fi
- detpg="$detpg<br>" 
  if [[ "$skop" != "" ]]; then  if [[ "$skop" != "" ]]; then
- detpg="$detpg<b>Microscopium:</b> $skop ($skop_typ)<br>"+ detpg+="<b>Microscopium:</b> $skop ($skop_typ)<br>"
  fi  fi
  if [[ "$eng" != "" ]]; then  if [[ "$eng" != "" ]]; then
- detpg="$detpg<b>Amplificatio:</b> $eng<br>" + detpg+="<b>Amplificatio:</b> $eng<br>"
- fi +
- detpg="$detpg<br>" +
- if [[ "$des" != "" ]]; then +
- detpg="$detpg<b>Depictio:</b> $des<br>"+
  fi  fi
  if [[ "$vid" != "" ]]; then  if [[ "$vid" != "" ]]; then
- detpg="$detpg<b>Video:</b> <a href=\"$vid\" target=\"_blank\">$vid</a><br>"+ detpg+="<b>Video:</b> <a href=\"$vid\" target=\"_blank\">$vid</a><br>"
  fi  fi
- detpg="$detpg</td><td style='min-width:66%'>"+ if [[ "$har" != "" ]]; then 
 + detpg+="<b>Collecting method:</b> $har<br>" 
 + fi 
 + if [[ "$den" != "" ]]; then 
 + detpg+="<b>Individuals found:</b> $den<br>" 
 + fi 
 + if [[ "$dur" != "" ]]; then 
 + detpg+="<b>Duration on stage:</b> $dur<br>" 
 + fi 
 + if [[ "$lrl" != "" ]]; then 
 + detpg+="<b>Locality reference:</b> <a href=\"$lrl\" target=\"_blank\">$lor</a><br>" 
 + elif [[ "$lor" != "" ]]; then 
 + detpg+="<b>Locality reference:</b> $lor<br>" 
 + fi 
 + if [[ "$des" != "" ]]; then 
 + detpg+="<b>Depictio:</b> $des<br>" 
 + fi 
 + detpg+="<br><b>More on <a href=\"../\">BioOSM map</a></b><br>" 
 + detpg+="<br>" 
 + 
 + lhx=$(echo "$kdex-0.022" | bc) 
 + lhy=$(echo "$kdey-0.010" | bc) 
 + pdx=$(echo "$kdex+0.022" | bc) 
 + pdy=$(echo "$kdey+0.010" | bc) 
 + detpg+="<iframe id='minimapa' src='https://www.openstreetmap.org/export/embed.html?bbox=$lhx%2C$lhy%2C$pdx%2C$pdy&amp;layer=mapnik&amp;marker=$kdey%2C$kdex'></iframe>" 
 + detpg+="</td><td style='min-width:66%;vertical-align:top'>" 
  if [[ "$obr" != "" ]]; then  if [[ "$obr" != "" ]]; then
- detpg="$detpg<a href=\"../img/$obr\"><img src=\"../img/$obr\" alt=\"$co\" class='detimg'></a>"+ detpg+="<a href=\"../img/$obr\"><img src=\"../img/$obr\" alt=\"$co\" class='detimg'></a>"
  else  else
  if [[ "$vid" != "" ]]; then  if [[ "$vid" != "" ]]; then
  detyt=$(echo "$vid" | sed -e 's/youtube.com\/watch?v=/youtube.com\/embed\//g')  detyt=$(echo "$vid" | sed -e 's/youtube.com\/watch?v=/youtube.com\/embed\//g')
- detpg="$detpg<iframe class='detvid' src='$detyt' frameborder='0' allow='encrypted-media' allowfullscreen></iframe>"+ detpg+="<iframe class='detvid' src='$detyt' frameborder='0' allow='encrypted-media' allowfullscreen></iframe>"
  else  else
- detpg="$detpg<img src=\"../$3\" alt=\"video\" class='detimg'>"+ detpg+="<img src=\"../$3\" alt=\"video\" class='detimg'>"
  fi  fi
  fi  fi
- detpg="$detpg</td></tr></table>" + if [[ "$lov" != "" ]]; then 
- detpg="$detpg</body></html>"+ detpg+="<img class=\"detimg\" src=\"../lokality/$lov\" alt=\"Locality photo\"><br>" 
 + fi 
 + 
 + detpg+="</td></tr></table>" 
 + detpg+="</body></html>"
  echo "$detpg" > "./det/$detid.htm"  echo "$detpg" > "./det/$detid.htm"
  
  # Plain log of entries  # Plain log of entries
- datelog="$datelog $kdy $kde <a href='./det/$detid.htm' target='_blank'>$co</a><br>\n"+ datelog+="$kdy $kde <a href='./det/$detid.htm' target='_blank'>$co</a><br>\n"
  
- >&2 echo "$co $obs"+ >&2 echo -e "\033[32m$co $obs\033[0m"
  
  ox="$kdex"  ox="$kdex"
Line 354: Line 418:
  echo "$json{}]}" | sed -e "s/^var data='//g" > "./bioosm.json"  echo "$json{}]}" | sed -e "s/^var data='//g" > "./bioosm.json"
  echo "$json{}]}'"  echo "$json{}]}'"
 +
 + rss+=$'</channel>\n'
 + rss+=$'</rss>\n'
 + echo "$rss" > "./bioosm.rss"
  
 } # KONEC FCE SPAGETY } # KONEC FCE SPAGETY
Line 376: Line 444:
 echo '<body>' echo '<body>'
 # Generate select # Generate select
-echo "<div id='plainlog'><b><a href='./plainlog.htm'>Plaintext log</a></b></div>"+echo "<div id='plainlog'><b><a href='./bioosm.rss'>RSS feed</a><br><a href='./plainlog.htm'>Quick news log</a></b></div>"
 echo "<h1 id='title'>BioOSM - arma biologica in tuis vicinia</h1>" echo "<h1 id='title'>BioOSM - arma biologica in tuis vicinia</h1>"
 ksel="<select id='reg' onChange='genphy()'>" ksel="<select id='reg' onChange='genphy()'>"
Line 393: Line 461:
 echo "Specie: <select id='spe' onChange='armageddon()'><option>ALL</option></select>" echo "Specie: <select id='spe' onChange='armageddon()'><option>ALL</option></select>"
 echo "<br><input type='button' value='Platyhelminthes' onClick='plostenkoidy()'>" echo "<br><input type='button' value='Platyhelminthes' onClick='plostenkoidy()'>"
 +echo "<input type='checkbox' id='studchecker' onChange='studdrv()'>&nbsp;Springs"
 #echo "<input type='button' value='Bugs' onClick='buggy()'>" #echo "<input type='button' value='Bugs' onClick='buggy()'>"
 echo "<br><br><div id='map' class='smallmap'></div>" echo "<br><br><div id='map' class='smallmap'></div>"
Line 429: Line 498:
 # Create plaintext log # Create plaintext log
 dateloghtm="<html><head>" dateloghtm="<html><head>"
-dateloghtm="$dateloghtm<meta http-equiv='Content-Type' content='text/html; charset=utf-8'>" +dateloghtm+="<meta http-equiv='Content-Type' content='text/html; charset=utf-8'>" 
-dateloghtm="$dateloghtm<link rel='stylesheet' href='./style.css' type='text/css'>" +dateloghtm+="<link rel='stylesheet' href='./style.css' type='text/css'>" 
-dateloghtm="$dateloghtm<title>Brmlab - BioOSM plaintext log</title>" +dateloghtm+="<title>Brmlab - BioOSM plaintext log</title>" 
-dateloghtm="$dateloghtm</head><body>"+dateloghtm+="</head><body>"
 datelogsort=$(echo -e "$datelog" | sort -r | uniq) datelogsort=$(echo -e "$datelog" | sort -r | uniq)
-dateloghtm="$dateloghtm $datelogsort" +dateloghtm+="$datelogsort" 
-dateloghtm="$dateloghtm</body></html>"+dateloghtm+="</body></html>"
 echo "$dateloghtm" > "./plainlog.htm" echo "$dateloghtm" > "./plainlog.htm"
 </code> </code>
Line 444: Line 513:
 var blob=JSON.parse(data) var blob=JSON.parse(data)
 var arma=blob.arma var arma=blob.arma
 +var stud=JSON.parse('{}');
  
 var vectorLayerDynamic = new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href="http://brmlab.cz">Brmlab</a>'}); var vectorLayerDynamic = new OpenLayers.Layer.Vector('Overlay',{attribution:'<a href="http://brmlab.cz">Brmlab</a>'});
 map.addLayer(vectorLayerDynamic); map.addLayer(vectorLayerDynamic);
 +var studlay = new OpenLayers.Layer.Vector("Overlay",{attribution:"<a href=\"http://brmlab.cz\">Brmlab</a>"}); // studanky
 +map.addLayer(studlay);
  
 var regsel=document.getElementById("reg") var regsel=document.getElementById("reg")
Line 464: Line 536:
 var ICON_protista="protista.png" var ICON_protista="protista.png"
 var ICON_biohazard="biohazard.svg" var ICON_biohazard="biohazard.svg"
 +var ICON_studanka="studanka.png"
 +
 +function getJSONstud()
 +{
 + url="./stud.json";
 + var request;
 + if(window.XMLHttpRequest)
 + request=new XMLHttpRequest();
 + else
 + request=new ActiveXObject("Microsoft.XMLHTTP");
 + request.onreadystatechange=function()
 + {
 + if(request.readyState==4)
 + {
 + stud=JSON.parse(request.responseText);
 + studdraw(stud);
 + }
 + }
 + request.open("GET",url,true);
 + request.send();
 +}
 +
 +function studdraw(sj)
 +{
 + studlay.destroyFeatures();
 + sjs=stud.std;
 + s=[];
 +
 + for(i=0;i<sjs.length;i++)
 + {
 + s[i] = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point(sjs[i].lon,sjs[i].lat).transform(epsg4326,projectTo),{'description':"<table class=\"hadtbl\">"+sjs[i].name+"</table>"},{'externalGraphic':ICON_studanka,'graphicHeight':24,'graphicWidth':24,'graphicXOffset':-12,'graphicYOffset':-12});
 + studlay.addFeatures(s[i]);
 + }
 +}
 +
 +function studdrv()
 +{
 + box=document.getElementById("studchecker");
 + if(box.checked)
 + getJSONstud();
 + else
 + studlay.destroyFeatures();
 +}
  
 // Return icon by Regnum // Return icon by Regnum
Line 868: Line 983:
 } // Konec armageddonu } // Konec armageddonu
  
-var laycon = [vectorLayer,vectorLayerDynamic];+var laycon = [vectorLayer,vectorLayerDynamic,studlay];
  
 var controls = {selector: new OpenLayers.Control.SelectFeature(laycon, { onSelect: createPopup, onUnselect: destroyPopup })}; var controls = {selector: new OpenLayers.Control.SelectFeature(laycon, { onSelect: createPopup, onUnselect: destroyPopup })};
Line 897: Line 1012:
 </code> </code>
  
-==== Taxonomie dle rodoveho jmena ====+==== Springs ====
  
-Script bere jako jediny parametr rodove jmeno a z wikipedie vyparsuje zbytek taxonomie. +To be able to better plan routes for collecting planarians, the knowledge of locations of springs seems to be important. So BioOSM can show them! Below is a script to get the locations from OSM XMLs obtainable from [[http://osm.kyblsoft.cz/archiv/]]. 
-<code bash tax.sh>+ 
 +<code bash studanky.sh>
 #!/bin/bash #!/bin/bash
 +# generate BioOSM compatible "springs"
 +# Usage: studanky.sh osmdump.xml
 +# 
 +# Download OSM file to be passed as $1
 +# wget "http://osm.kyblsoft.cz/archiv/czech_republic-2019-11-03.osm.gz"
 +# gzip -kd ./czech_republic-2019-11-03.osm.gz
 +#
 +# Pozor ^^ sezere spoustu rameti
 +#
 +
 +osm=$(cat "$1" | sed -e 's/<node/\'$'\a<node/g' -e 's/<\/node>/<\/node\'$'\a/g' -e 's/<way/\'$'\a<way/g' -e 's/<\/way>/<\/way>\'$'\a/g' -e 's/<relation/\'$'\a<relation/g' -e 's/<\/relation>/<\/relation>\'$'\a/g' | tr -d '\n' | tr '\a' '\n' | grep 'v="spring"' | grep 'k="natural"')
 +
 +json='{"version":"'$(date --rfc-3339=seconds)'","std":['
 +
 +while IFS='' read -r spr || [[ -n "$spr" ]]; do
 + n=$(echo "$spr" | grep -oPe 'k="name" v="[^"]*"' | sed -e 's/k="name" v="//g' -e 's/"$//g')
 + lat=$(echo "$spr" | grep -oPe ' lat="[^"]*"' | sed -e 's/ lat="//g' -e 's/"$//g')
 + lon=$(echo "$spr" | grep -oPe ' lon="[^"]*"' | sed -e 's/ lon="//g' -e 's/"$//g')
 +
 + if [ "$lat" = "" ] || [ "$lon" = "" ]; then
 + continue; # <way> a tak
 + fi
 + if [[ "$n" = "" ]]; then
 + n="inkognito"
 + >&2 echo -e "\033[34m $lat $lon \033[0m";
 + fi
 +
 + json+="{"
 + json+=" \"name\":\"$n\","
 + json+=" \"lon\":\"$lon\","
 + json+=" \"lat\":\"$lat\""
 + json+="},"
 +
 + >&2 echo -e "\033[32m $n $lat $lon\033[0m"
  
-wat=$(wget -q -O - "https://en.wikipedia.org/wiki/Template:Taxonomy/$1" 2>/dev/null | tr -d '\n' | sed -e $'s/<\/tr>/<\/tr>\\n/g' | grep "<tr>" | sed -e 's/<[^>]*>//g' | grep -o -e "^[a-zA-Z]*:[a-zA-Z]*")+done <<< $(echo "$osm")
  
-echo $(echo "$wat" | grep "Domain:") +echo "$json{}]}"
-echo $(echo "$wat" | grep "Kingdom:") +
-echo $(echo "$wat" | grep "Phylum:") +
-echo $(echo "$wat" | grep "Class:") +
-echo $(echo "$wat" | grep "Order:") +
-echo $(echo "$wat" | grep "Family:") +
-echo $(echo "$wat" | grep "Genus:")+
 </code> </code>
project/bioosm/start.txt · Last modified: 2023/09/21 12:15 by sachy