project:bioosm:start
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Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
project:bioosm:start [2018/06/07 16:01] – sachy | project:bioosm:start [2022/09/18 16:53] – sachy | ||
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{{template>: | {{template>: | ||
name=Biologicke zbrane ve vasem okoli| | name=Biologicke zbrane ve vasem okoli| | ||
- | image= bioosm:biohazard.svg?200 | | + | image= bioosm:bioosm.jpg?400 | |
- | founder=[[user: | + | founder=[[user: |
- | interested=[[user: | + | interested=[[user: |
- | sw=CC| | + | sw=CC-BY-SA| |
hw=N/A| | hw=N/A| | ||
status=active}} | status=active}} | ||
~~META: | ~~META: | ||
status = active | status = active | ||
- | & | + | & |
~~ | ~~ | ||
[[http:// | [[http:// | ||
+ | |||
+ | ==== K cemu to je ==== | ||
+ | |||
+ | * interaktivni mapa vhodna k zobrazovani vetsiho mnozstvi fotek, brmlabi wiki, sluzby typu phtagr a soup se zdaly nevhodne k publikaci tohoto typu obsahu, wiki by byla prilis obludna, na beznych sdilecich obrazkovych sluzbach se neda nic pohodlne dohledavat a davat tam biologicky smysluplne a prehledne popisky | ||
+ | * monitoring zivocichu a rostlin podle zajmu prispevovatelu | ||
+ | * snadne klikaci katalogovani nalezu skrze Tellico nevyzadujici coding skills | ||
+ | * TODO - jednoduche selekce zajmoveho okruhu subjektu [napr. podle rodu, biotopu, datumu] na mape | ||
+ | * procvicovani temne magie commandu grep, sed a regexpu | ||
==== Jak to funguje ==== | ==== Jak to funguje ==== | ||
Line 20: | Line 28: | ||
Podklad jsou [[https:// | Podklad jsou [[https:// | ||
- | Jednotliva pozorovani jsou v databazi [[http:// | + | Jednotliva pozorovani jsou v databazi [[http:// |
+ | |||
+ | Pro nadsence je vygenerovany taky prehled prispevku plainlog.htm serazeny dle data pridani do databaze. | ||
+ | |||
+ | Pokud chcete vedet co je noveho, odebirejte projektovou [[http:// | ||
Obrazky v plnem rozliseni jsou v podadresari " | Obrazky v plnem rozliseni jsou v podadresari " | ||
- | Pozorovani ktera se v mape zobrazi lze filtrovat dle prislusnosti k radu (bakterie, zvirata, rostliny, | + | Pozorovani ktera se v mape zobrazi lze filtrovat dle prislusnosti k radu (bakterie, zvirata, rostliny, |
=== Tellico sample database === | === Tellico sample database === | ||
Line 40: | Line 52: | ||
- seskupeni dle lokality | - seskupeni dle lokality | ||
- | < | + | < |
praseTC=$(unzip -p " | praseTC=$(unzip -p " | ||
</ | </ | ||
Line 47: | Line 59: | ||
Nazvy vrstev musi byt v JS poli kvuli ovladacimu API (skryti/ | Nazvy vrstev musi byt v JS poli kvuli ovladacimu API (skryti/ | ||
- | < | + | < |
var laycon = [vectorLayer, | var laycon = [vectorLayer, | ||
... | ... | ||
Line 53: | Line 65: | ||
</ | </ | ||
- | < | + | < |
var controls = { | var controls = { | ||
selector: new OpenLayers.Control.SelectFeature(laycon, | selector: new OpenLayers.Control.SelectFeature(laycon, | ||
Line 62: | Line 74: | ||
=== Prepnuti viditelnych vrstev === | === Prepnuti viditelnych vrstev === | ||
- | < | + | < |
function kinchange() { | function kinchange() { | ||
kinsel=document.getElementById(' | kinsel=document.getElementById(' | ||
Line 74: | Line 86: | ||
=== Nastaveni brmlabu do paticky map === | === Nastaveni brmlabu do paticky map === | ||
- | < | + | < |
OpenLayers.Layer.Vector(' | OpenLayers.Layer.Vector(' | ||
</ | </ | ||
Line 81: | Line 93: | ||
OSM maji defaultne copyright nesmyslne odsazeny od spodniho okraje mapy, CSS zmena na nejaky rozumny offset: | OSM maji defaultne copyright nesmyslne odsazeny od spodniho okraje mapy, CSS zmena na nejaky rozumny offset: | ||
- | < | + | < |
.olControlAttribution | .olControlAttribution | ||
{ | { | ||
Line 89: | Line 101: | ||
==== parse_tellico.sh ==== | ==== parse_tellico.sh ==== | ||
- | < | + | < |
#!/bin/bash | #!/bin/bash | ||
# Parse Tellico database to BioOSM index.htm | # Parse Tellico database to BioOSM index.htm | ||
Line 95: | Line 107: | ||
# Print result to stdout | # Print result to stdout | ||
# | # | ||
- | # Generate minis in simg folder | + | # <iframe width=" |
- | # find ./ -type f -exec mogrify -verbose -layers Dispose -resize 128\>x128\> -quality 100% {} + | + | # // vectorLayer.removeFeatures(atol) |
- | # | + | # // map.removeLayer(vectorLayer) |
# | # | ||
# | # | ||
# Creates: | # Creates: | ||
- | # (to stdout) | + | # (to stdout) |
# | # | ||
+ | # | ||
+ | # | ||
+ | # | ||
# | # | ||
rm -rfv " | rm -rfv " | ||
mkdir -p " | mkdir -p " | ||
- | #cat "./index_head.htm" | + | |
+ | ICON_animalia=" | ||
+ | ICON_bacteria=" | ||
+ | ICON_fungi=" | ||
+ | ICON_chromista=" | ||
+ | ICON_plantae=" | ||
+ | ICON_plostenkoid=" | ||
+ | ICON_protista=" | ||
+ | ICON_biohazard=" | ||
+ | |||
+ | json="" | ||
+ | |||
+ | rss=$'<? | ||
+ | rss+=$'< | ||
+ | rss+=$'< | ||
+ | rss+=$'< | ||
+ | rss+=$'< | ||
+ | rss+=$'< | ||
+ | rss+=$'< | ||
+ | rss+=$'< | ||
+ | rss+=$'< | ||
+ | |||
+ | # Return icon by Regnum | ||
+ | function geticon () { | ||
+ | case "$1" in | ||
+ | " | ||
+ | echo " | ||
+ | " | ||
+ | echo " | ||
+ | " | ||
+ | echo " | ||
+ | " | ||
+ | echo " | ||
+ | " | ||
+ | echo " | ||
+ | " | ||
+ | echo " | ||
+ | *) | ||
+ | echo " | ||
+ | esac | ||
+ | } | ||
+ | |||
+ | function safehtml () { | ||
+ | echo " | ||
+ | } | ||
+ | |||
+ | i=1 # GLOBAL increment must persist multiple spagety() calls; incremented to infinity | ||
+ | # Core function generating entries matching selection criteria (ie Kingdom) | ||
+ | # !!! BEZ ODSAZENI !!! | ||
+ | # $1 = list of entries | ||
+ | # $2 = layer name | ||
+ | # $3 = icon of the points | ||
+ | function spagety () { | ||
+ | |||
+ | bylo="" | ||
+ | sam="" | ||
+ | osam="" | ||
+ | spoj="" | ||
+ | ospoj="" | ||
+ | ox="" | ||
+ | oy="" | ||
+ | datelog="" | ||
+ | json=" | ||
+ | |||
+ | while IFS='' | ||
+ | co=$(echo " | ||
+ | co=$(safehtml " | ||
+ | obr=$(echo " | ||
+ | obr=$(safehtml " | ||
+ | kde=$(echo " | ||
+ | kde=$(safehtml " | ||
+ | kdex=$(echo " | ||
+ | kdex=$(safehtml " | ||
+ | kdey=$(echo " | ||
+ | kdey=$(safehtml " | ||
+ | kdy=$(echo " | ||
+ | kdy=$(safehtml " | ||
+ | skop_typ=$(echo " | ||
+ | skop_typ=$(safehtml " | ||
+ | skop=$(echo " | ||
+ | skop=$(safehtml " | ||
+ | imp=$(echo " | ||
+ | imp=$(safehtml " | ||
+ | reg=$(echo " | ||
+ | reg=$(safehtml " | ||
+ | phy=$(echo " | ||
+ | phy=$(safehtml " | ||
+ | cla=$(echo " | ||
+ | cla=$(safehtml " | ||
+ | ord=$(echo " | ||
+ | ord=$(safehtml " | ||
+ | fam=$(echo " | ||
+ | fam=$(safehtml " | ||
+ | gen=$(echo " | ||
+ | gen=$(safehtml " | ||
+ | spe=$(echo " | ||
+ | spe=$(safehtml " | ||
+ | loc=$(echo " | ||
+ | loc=$(safehtml " | ||
+ | des=$(echo " | ||
+ | des=$(safehtml " | ||
+ | vid=$(echo " | ||
+ | vid=$(safehtml " | ||
+ | bio=$(echo " | ||
+ | bio=$(safehtml " | ||
+ | eng=$(echo " | ||
+ | eng=$(safehtml " | ||
+ | obs=$(echo " | ||
+ | obs=$(safehtml " | ||
+ | lnk=$(echo " | ||
+ | lnk=$(safehtml " | ||
+ | har=$(echo " | ||
+ | den=$(echo " | ||
+ | dur=$(echo " | ||
+ | lor=$(echo " | ||
+ | lrl=$(echo " | ||
+ | lov=$(echo " | ||
+ | |||
+ | # >&2 echo "$co - $har - $den - $dur - $lor - $lrl - $lov" | ||
+ | |||
+ | detid=$(echo " | ||
+ | |||
+ | if [[ " | ||
+ | >& | ||
+ | continue; | ||
+ | fi | ||
+ | zkurvenetellico=$(echo " | ||
+ | if [[ " | ||
+ | >& | ||
+ | continue; | ||
+ | fi | ||
+ | |||
+ | if [[ " | ||
+ | wikisp=" | ||
+ | else | ||
+ | wikisp=" | ||
+ | fi | ||
+ | |||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | json+=" | ||
+ | |||
+ | |||
+ | rss+=$'< | ||
+ | rss+=$' | ||
+ | rss+=$' | ||
+ | rss+=$' | ||
+ | rss+=$' | ||
+ | rss+=$' | ||
+ | rss+=$'</ | ||
+ | |||
+ | |||
+ | # Generate detail page | ||
+ | detid=$(echo " | ||
+ | detpg="< | ||
+ | detpg+="< | ||
+ | detpg+="< | ||
+ | detpg+="< | ||
+ | detpg+="</ | ||
+ | detpg+="< | ||
+ | detpg+="< | ||
+ | detpg+="< | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | detpg+="< | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | loc="< | ||
+ | fi | ||
+ | detpg+="< | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | elif [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | detpg+="< | ||
+ | detpg+="< | ||
+ | |||
+ | lhx=$(echo " | ||
+ | lhy=$(echo " | ||
+ | pdx=$(echo " | ||
+ | pdy=$(echo " | ||
+ | detpg+="< | ||
+ | detpg+="</ | ||
+ | |||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | else | ||
+ | if [[ " | ||
+ | detyt=$(echo " | ||
+ | detpg+="< | ||
+ | else | ||
+ | detpg+="< | ||
+ | fi | ||
+ | fi | ||
+ | if [[ " | ||
+ | detpg+="< | ||
+ | fi | ||
+ | |||
+ | detpg+="</ | ||
+ | detpg+="</ | ||
+ | echo " | ||
+ | |||
+ | # Plain log of entries | ||
+ | datelog+=" | ||
+ | |||
+ | >& | ||
+ | |||
+ | ox=" | ||
+ | oy=" | ||
+ | |||
+ | i=$(($i+1)) | ||
+ | |||
+ | done <<< | ||
+ | echo " | ||
+ | echo " | ||
+ | |||
+ | rss+=$'</ | ||
+ | rss+=$'</ | ||
+ | echo " | ||
+ | |||
+ | } # KONEC FCE SPAGETY | ||
+ | |||
# Parse Tellico file to list of entries | # Parse Tellico file to list of entries | ||
Line 114: | Line 432: | ||
# Sorted unique Kingdoms (to be passed as selection criteria) | # Sorted unique Kingdoms (to be passed as selection criteria) | ||
kingdoms=$(echo " | kingdoms=$(echo " | ||
- | |||
echo '< | echo '< | ||
Line 120: | Line 437: | ||
echo '< | echo '< | ||
echo ' | echo ' | ||
- | echo ' | + | echo ' |
echo ' | echo ' | ||
+ | echo ' | ||
echo ' | echo ' | ||
echo '</ | echo '</ | ||
+ | echo '< | ||
+ | # Generate select | ||
+ | echo "< | ||
+ | echo "< | ||
+ | ksel="< | ||
+ | ksel=" | ||
+ | while IFS='' | ||
+ | ksel=" | ||
+ | done <<< | ||
+ | ksel=" | ||
+ | echo " | ||
- | echo "<body>" | + | echo "Phylum: |
- | echo "<h1 id='title'>BioOSM - armis biologica in tuis vicinia</h1>" | + | echo "Classis: |
- | + | echo "Ordo: <select id='ord' onChange=' | |
- | # Generate select | + | echo "Familia: |
- | ksel="< | + | echo " |
- | ksel="$ksel<option value='ALL' | + | echo "Specie: |
- | while IFS='' | + | echo "<br><input type=' |
- | ksel="$ksel<option value='" | + | echo "<input type=' |
- | done <<< $(echo " | + | #echo "< |
- | ksel=" | + | echo "< |
- | echo "Regnum: $ksel | " | + | echo "< |
- | echo "< | + | echo "This site is owned by members of the <a href=' |
- | + | ||
- | echo "<div id=' | + | |
echo "</ | echo "</ | ||
- | echo '< | + | echo "< |
echo 'map = new OpenLayers.Map(" | echo 'map = new OpenLayers.Map(" | ||
echo ' | echo ' | ||
Line 158: | Line 484: | ||
echo ' new OpenLayers.Geometry.Point(14.41876, | echo ' new OpenLayers.Geometry.Point(14.41876, | ||
echo ' | echo ' | ||
- | echo ' | + | echo ' |
echo ' | echo ' | ||
echo ' | echo ' | ||
Line 164: | Line 490: | ||
echo " | echo " | ||
+ | spagety " | ||
+ | echo '</ | ||
+ | echo '< | ||
+ | echo "</ | ||
- | i=1 # GLOBAL increment must persist multiple spagety() calls; incremented to infinity | + | # Create plaintext log |
- | # Core function generating entries matching selection criteria (ie Kingdom) | + | dateloghtm="< |
- | # !!! BEZ ODSAZENI !!! | + | dateloghtm+="< |
- | # $1 = list of entries | + | dateloghtm+="< |
- | # $2 = layer name | + | dateloghtm+="< |
- | # $3 = icon of the points | + | dateloghtm+="</ |
- | function spagety | + | datelogsort=$(echo -e " |
+ | dateloghtm+=" | ||
+ | dateloghtm+="</ | ||
+ | echo " | ||
+ | </ | ||
- | bylo="" | + | ==== bioosm.js ==== |
- | sam="" | + | |
- | osam="" | + | |
- | spoj="" | + | |
- | ospoj="" | + | |
- | ox="" | + | |
- | oy="" | + | |
- | while IFS='' | + | <code javascript bioosm.js> |
+ | var blob=JSON.parse(data) | ||
+ | var arma=blob.arma | ||
+ | var stud=JSON.parse('{}'); | ||
- | co=$(echo " | + | var vectorLayerDynamic |
- | obr=$(echo " | + | map.addLayer(vectorLayerDynamic); |
- | kde=$(echo " | + | var studlay |
- | kdex=$(echo | + | map.addLayer(studlay); |
- | kdey=$(echo " | + | |
- | kdy=$(echo " | + | |
- | skop_typ=$(echo " | + | |
- | skop=$(echo | + | |
- | imp=$(echo " | + | |
- | reg=$(echo " | + | |
- | phy=$(echo " | + | |
- | cla=$(echo | + | |
- | ord=$(echo | + | |
- | fam=$(echo " | + | |
- | gen=$(echo | + | |
- | spe=$(echo " | + | |
- | loc=$(echo | + | |
- | des=$(echo | + | |
- | vid=$(echo " | + | |
- | bio=$(echo " | + | |
- | eng=$(echo " | + | |
- | obs=$(echo " | + | |
+ | var regsel=document.getElementById(" | ||
+ | var physel=document.getElementById(" | ||
+ | var clasel=document.getElementById(" | ||
+ | var ordsel=document.getElementById(" | ||
+ | var famsel=document.getElementById(" | ||
+ | var gensel=document.getElementById(" | ||
+ | var spesel=document.getElementById(" | ||
- | if [[ "$kdex" = "" | + | var ICON_animalia="animalia.png" |
- | >&2 echo $(echo " | + | var ICON_bacteria="bacteria.png" |
- | continue; | + | var ICON_fungi="fungi.png" |
- | fi | + | var ICON_chromista="chromista.png" |
- | zkurvenetellico=$(echo | + | var ICON_plantae=" |
- | if [[ "$zkurvenetellico" = ".jpeg" | + | var ICON_plostenkoid="plostenkoid.png" |
- | >&2 echo "$obr $co" | + | var ICON_protista="protista.png" |
- | continue; | + | var ICON_biohazard="biohazard.svg" |
- | fi | + | var ICON_studanka=" |
+ | function getJSONstud() | ||
+ | { | ||
+ | url=" | ||
+ | var request; | ||
+ | if(window.XMLHttpRequest) | ||
+ | request=new XMLHttpRequest(); | ||
+ | else | ||
+ | request=new ActiveXObject(" | ||
+ | request.onreadystatechange=function() | ||
+ | { | ||
+ | if(request.readyState==4) | ||
+ | { | ||
+ | stud=JSON.parse(request.responseText); | ||
+ | studdraw(stud); | ||
+ | } | ||
+ | } | ||
+ | request.open(" | ||
+ | request.send(); | ||
+ | } | ||
- | # Generate detail page | + | function studdraw(sj) |
- | detid=$(echo " | + | { |
- | detpg="< | + | studlay.destroyFeatures(); |
- | detpg=" | + | sjs=stud.std; |
- | detpg=" | + | s=[]; |
- | detpg=" | + | |
- | detpg=" | + | for(i=0;i<sjs.length; |
- | detpg=" | + | { |
- | detpg=" | + | s[i] = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point(sjs[i].lon,sjs[i].lat).transform(epsg4326, |
- | if [[ " | + | studlay.addFeatures(s[i]); |
- | detpg=" | + | } |
- | fi | + | } |
- | if [[ " | + | |
- | detpg=" | + | function studdrv() |
- | fi | + | { |
- | if [[ " | + | box=document.getElementById("studchecker"); |
- | detpg=" | + | if(box.checked) |
- | fi | + | getJSONstud(); |
- | if [[ " | + | |
- | detpg=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | detpg=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | detpg=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | detpg=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | detpg=" | + | |
- | fi | + | |
- | detpg=" | + | |
- | if [[ " | + | |
- | detpg="$detpg< | + | |
- | fi | + | |
- | detpg=" | + | |
- | if [[ " | + | |
- | detpg=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | detpg=" | + | |
- | fi | + | |
- | detpg=" | + | |
- | if [[ " | + | |
- | detpg=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | detpg=" | + | |
- | fi | + | |
- | detpg=" | + | |
- | if [[ " | + | |
- | detpg=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | detpg=" | + | |
- | fi | + | |
- | detpg=" | + | |
- | if [[ " | + | |
- | detpg=" | + | |
else | else | ||
- | if [[ "$vid" != "" | + | studlay.destroyFeatures(); |
- | detyt=$(echo "$vid" | sed -e 's/youtube.com\/watch?v=/youtube.com\/embed\//g') | + | } |
- | detpg="$detpg<iframe class='detvid' src='$detyt' | + | |
+ | // Return icon by Regnum | ||
+ | function geticon (a,i) | ||
+ | { | ||
+ | var r="" | ||
+ | if(document.getElementById(" | ||
+ | r=document.getElementById(" | ||
+ | else | ||
+ | { | ||
+ | r=a[i].regnum | ||
+ | for(var e=i;e>=0 && a[e].locus==a[i].locus; | ||
+ | if(a[e].regnum!=a[i].regnum) | ||
+ | { | ||
+ | r="ALL"; | ||
+ | break; | ||
+ | } | ||
+ | } | ||
+ | |||
+ | switch (r) | ||
+ | { | ||
+ | case " | ||
+ | return ICON_animalia; | ||
+ | case " | ||
+ | return ICON_bacteria; | ||
+ | case " | ||
+ | return ICON_fungi; | ||
+ | case " | ||
+ | return ICON_chromista; | ||
+ | case " | ||
+ | return ICON_plantae; | ||
+ | case " | ||
+ | return ICON_protista; | ||
+ | default: | ||
+ | return ICON_biohazard | ||
+ | } | ||
+ | } | ||
+ | |||
+ | function genphy() { | ||
+ | physel.innerHTML="< | ||
+ | clasel.innerHTML="< | ||
+ | ordsel.innerHTML="< | ||
+ | famsel.innerHTML="< | ||
+ | gensel.innerHTML="< | ||
+ | spesel.innerHTML="< | ||
+ | |||
+ | var phyarr=[] | ||
+ | for (var i=0; | ||
+ | { | ||
+ | if(regsel.value==arma[i].regnum && arma[i].phynum!="" | ||
+ | phyarr.push(arma[i].phylum) | ||
+ | } | ||
+ | phyarr.sort() | ||
+ | for (var i=0; | ||
+ | { | ||
+ | if(i==0) | ||
+ | { | ||
+ | physel.innerHTML+="< | ||
+ | continue | ||
+ | } | ||
+ | if(phyarr[i]!=phyarr[i-1]) | ||
+ | physel.innerHTML+="< | ||
+ | } | ||
+ | armageddon() // Populate the map with monsters... | ||
+ | } | ||
+ | |||
+ | function gencla() { | ||
+ | clasel.innerHTML="< | ||
+ | ordsel.innerHTML="< | ||
+ | famsel.innerHTML="< | ||
+ | gensel.innerHTML="< | ||
+ | spesel.innerHTML="< | ||
+ | |||
+ | var claarr=[] | ||
+ | for (var i=0;i< | ||
+ | { | ||
+ | if(physel.value==arma[i].phylum && arma.classis!="" | ||
+ | claarr.push(arma[i].classis) | ||
+ | } | ||
+ | claarr.sort() | ||
+ | for (var i=0; | ||
+ | { | ||
+ | if(i==0) | ||
+ | { | ||
+ | clasel.innerHTML+="< | ||
+ | continue | ||
+ | } | ||
+ | if(claarr[i]!=claarr[i-1]) | ||
+ | clasel.innerHTML+="< | ||
+ | } | ||
+ | armageddon() // Populate the map with monsters... | ||
+ | } | ||
+ | |||
+ | function genord() { | ||
+ | ordsel.innerHTML="< | ||
+ | famsel.innerHTML="< | ||
+ | gensel.innerHTML="< | ||
+ | spesel.innerHTML="< | ||
+ | var ordarr=[] | ||
+ | for (var i=0; | ||
+ | { | ||
+ | if(clasel.value==arma[i].classis && arma[i].ordo!="" | ||
+ | ordarr.push(arma[i].ordo) | ||
+ | } | ||
+ | ordarr.sort() | ||
+ | for (var i=0; | ||
+ | { | ||
+ | if(i==0) | ||
+ | { | ||
+ | ordsel.innerHTML+="< | ||
+ | continue | ||
+ | } | ||
+ | if(ordarr[i]!=ordarr[i-1]) | ||
+ | ordsel.innerHTML+="< | ||
+ | } | ||
+ | armageddon() // Populate the map with monsters... | ||
+ | } | ||
+ | |||
+ | function genfam() { | ||
+ | famsel.innerHTML="< | ||
+ | gensel.innerHTML="< | ||
+ | spesel.innerHTML="< | ||
+ | var famarr=[] | ||
+ | for (var i=0; | ||
+ | { | ||
+ | if(ordsel.value==arma[i].ordo && arma[i].familia!="" | ||
+ | famarr.push(arma[i].familia) | ||
+ | } | ||
+ | famarr.sort() | ||
+ | for (var i=0; | ||
+ | { | ||
+ | if(i==0) | ||
+ | { | ||
+ | famsel.innerHTML+="< | ||
+ | continue | ||
+ | } | ||
+ | if(famarr[i]!=famarr[i-1]) | ||
+ | famsel.innerHTML+="< | ||
+ | } | ||
+ | armageddon() // Populate the map with monsters... | ||
+ | } | ||
+ | |||
+ | function gengen() { | ||
+ | gensel.innerHTML="< | ||
+ | spesel.innerHTML="< | ||
+ | var genarr=[] | ||
+ | for (var i=0; | ||
+ | { | ||
+ | if(famsel.value==arma[i].familia && arma[i].genus!="" | ||
+ | genarr.push(arma[i].genus) | ||
+ | } | ||
+ | genarr.sort() | ||
+ | for (var i=0; | ||
+ | { | ||
+ | if(i==0) | ||
+ | { | ||
+ | gensel.innerHTML+="< | ||
+ | continue | ||
+ | } | ||
+ | if(genarr[i]!=genarr[i-1]) | ||
+ | gensel.innerHTML+="< | ||
+ | } | ||
+ | //genspe() // ...and here we go | ||
+ | armageddon() // Populate the map with monsters... | ||
+ | } | ||
+ | |||
+ | function genspe() | ||
+ | { | ||
+ | spesel.innerHTML="< | ||
+ | var spearr=[] | ||
+ | for (var i=0; | ||
+ | { | ||
+ | if(gensel.value==arma[i].genus && arma[i].specie!="" | ||
+ | spearr.push(arma[i].specie) | ||
+ | } | ||
+ | spearr.sort() | ||
+ | for (var i=0; | ||
+ | { | ||
+ | if(i==0) | ||
+ | { | ||
+ | spesel.innerHTML+="< | ||
+ | continue | ||
+ | } | ||
+ | if(spearr[i]!=spearr[i-1]) | ||
+ | spesel.innerHTML+="< | ||
+ | } | ||
+ | armageddon() // Populate the map with monsters... | ||
+ | } | ||
+ | |||
+ | function armageddon() | ||
+ | { | ||
+ | var speval=document.getElementById(" | ||
+ | var genval=document.getElementById(" | ||
+ | var famval=document.getElementById(" | ||
+ | var ordval=document.getElementById(" | ||
+ | var claval=document.getElementById(" | ||
+ | var phyval=document.getElementById(" | ||
+ | var regval=document.getElementById(" | ||
+ | var a=[] | ||
+ | |||
+ | if(speval!=" | ||
+ | { | ||
+ | for(var i=0; | ||
+ | if(arma[i].specie==speval && arma[i].genus==genval) // Check genus because of unknown " | ||
+ | a.push(arma[i]) | ||
+ | } | ||
+ | else if(genval!=" | ||
+ | { | ||
+ | for(var i=0; | ||
+ | if(arma[i].genus==genval) | ||
+ | a.push(arma[i]) | ||
+ | } | ||
+ | else if(famval!=" | ||
+ | { | ||
+ | for(var i=0; | ||
+ | if(arma[i].familia==famval) | ||
+ | a.push(arma[i]) | ||
+ | } | ||
+ | else if(ordval!=" | ||
+ | { | ||
+ | for(var i=0; | ||
+ | if(arma[i].ordo==ordval) | ||
+ | a.push(arma[i]) | ||
+ | } | ||
+ | else if(claval!=" | ||
+ | { | ||
+ | for(var i=0; | ||
+ | if(arma[i].classis==claval) | ||
+ | a.push(arma[i]) | ||
+ | } | ||
+ | else if(phyval!=" | ||
+ | { | ||
+ | for(var i=0; | ||
+ | if(arma[i].phylum==phyval) | ||
+ | a.push(arma[i]) | ||
+ | } | ||
+ | else if(regval!=" | ||
+ | { | ||
+ | for(var i=0; | ||
+ | if(arma[i].regnum==regval) | ||
+ | a.push(arma[i]) | ||
+ | } | ||
+ | else // Regnum: ALL | ||
+ | { | ||
+ | for(var i=0; | ||
+ | a.push(arma[i]) | ||
+ | } | ||
+ | |||
+ | icongeddon(a) | ||
+ | } | ||
+ | |||
+ | function buggy() | ||
+ | { | ||
+ | var p=[] | ||
+ | for(var i=0; | ||
+ | { | ||
+ | if(arma[i].regnum=="" | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | | ||
+ | p.push(arma[i]) | ||
+ | } | ||
+ | icongeddon(p) | ||
+ | } | ||
+ | |||
+ | function plostenkoidy() | ||
+ | { | ||
+ | var p=[] | ||
+ | for(var i=0; | ||
+ | { | ||
+ | if(arma[i].phylum==" | ||
+ | p.push(arma[i]) | ||
+ | } | ||
+ | icongeddon(p) | ||
+ | } | ||
+ | |||
+ | function icongeddon(a) | ||
+ | { | ||
+ | //alert(a.length) | ||
+ | while(map.popups.length) | ||
+ | map.removePopup(map.popups[0]) | ||
+ | vectorLayerDynamic.destroyFeatures() | ||
+ | |||
+ | var bylo="" | ||
+ | var sam="" | ||
+ | var osam="" | ||
+ | var spoj="" | ||
+ | var ospoj="" | ||
+ | var ox="" | ||
+ | var oy="" | ||
+ | var datelog="" | ||
+ | var i=0 // Iterator over a[] (needed after FOR) | ||
+ | var n=[] // New points in the layer | ||
+ | var muchicons=0 // How much Regnum' | ||
+ | var samicon=ICON_biohazard | ||
+ | var spojicon=ICON_biohazard // Icon | ||
+ | |||
+ | for(; | ||
+ | { | ||
+ | // Pokracujem v hadovi | ||
+ | if(a[i].locus == bylo) | ||
+ | { | ||
+ | sam=""; | ||
+ | spoj+="<tr>< | ||
+ | spoj+='<a href=" | ||
+ | if(a[i].obr != "" | ||
+ | spoj+='< | ||
+ | else | ||
+ | spoj+='<img src=./"'+ICON_biohazard+'" class=" | ||
+ | spoj+="< | ||
+ | spoj+="</ | ||
+ | ox=a[i].x | ||
+ | oy=a[i].y | ||
+ | continue; | ||
+ | } | ||
+ | |||
+ | if(a[i].specie==" | ||
+ | wikisp=" | ||
else | else | ||
- | detpg="$detpg< | + | wikisp="https://en.wikipedia.org/wiki/"+a[i].genus+" "+a[i].specie |
- | fi | + | |
- | fi | + | |
- | detpg=" | + | |
- | detpg="$detpg</ | + | |
- | echo " | + | |
- | # Pokracujem v hadovi | + | // Bud prvni zaznam, nebo zmena pozice |
- | if [[ "$kde" = "$bylo" ]]; then | + | |
- | sam="" | + | // Predchozi pozice jen 1 zaznam? |
- | spoj="$spoj< | + | if(sam != "" |
- | if [[ "$obr" | + | { |
- | spoj="$spoj<img src=\" | + | samicon=geticon(a, |
+ | n[i] = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point(ox, | ||
+ | vectorLayerDynamic.addFeatures(n[i]); | ||
+ | spoj="" | ||
+ | sam="" | ||
+ | } // ELSE vytvori prazdny radek | ||
+ | // Predchozi pozice vic zaznamu? | ||
+ | if(spoj!="" | ||
+ | { | ||
+ | spojicon=geticon(a, | ||
+ | n[i] = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point(ox, | ||
+ | vectorLayerDynamic.addFeatures(n[i]); | ||
+ | spoj="" | ||
+ | sam="" | ||
+ | } | ||
+ | |||
+ | bylo=a[i].locus | ||
+ | spoj='< | ||
+ | if(a[i].obr != "" | ||
+ | spoj+='<img src=" | ||
else | else | ||
- | spoj="$spoj<img src=\"./$3\" class=\" | + | spoj+='<img src=" |
- | fi | + | spoj+='<td>' |
- | spoj="$spoj<td>$co<br>$kdy</td>" | + | spoj+="</ |
- | spoj=" | + | |
- | ox=" | + | |
- | oy=" | + | |
- | continue; | + | |
- | fi | + | |
- | # Bud prvni zaznam, nebo zmena pozice | ||
- | # Predchozi pozice jen 1 zaznam? | + | sam='< |
- | if [[ "$sam" | + | sam+='< |
- | echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($ox,$oy).transform(epsg4326, | + | sam+='< |
- | echo "$2.addFeatures(n$i);" | + | if(a[i].imperium != "" |
- | spoj="" | + | sam+='< |
- | sam="" | + | if(a[i].regnum != "" |
- | fi # ELSE vytvori prazdny radek | + | sam+='< |
- | # Predchozi pozice vic zaznamu? | + | if(a[i].phylum != "" |
- | if [[ "$spoj" != "" | + | sam+='< |
- | echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($ox,$oy).transform(epsg4326, | + | if(a[i].classis != "" |
- | | + | sam+='< |
- | spoj="" | + | if(a[i].ordo != "" |
- | sam="" | + | sam+='< |
- | fi | + | if(a[i].familia != "") |
+ | sam+='< | ||
+ | if(a[i].genus != "" | ||
+ | sam+='< | ||
+ | if(a[i].specie != "" | ||
+ | sam+='< | ||
+ | if(a[i].bio != "" | ||
+ | sam+="< | ||
+ | if(a[i].quando | ||
+ | sam+="< | ||
+ | sam+="< | ||
+ | if(a[i].spec != "" | ||
+ | | ||
+ | if(a[i].micro != "" | ||
+ | sam+="< | ||
+ | if(a[i].amp != "" | ||
+ | sam+="<b>Amplificatio:</b> "+a[i].amp+"< | ||
+ | /* if [[ "$des" | ||
+ | # sam="$sam< | ||
+ | # fi */ | ||
+ | if(a[i].vid != "" | ||
+ | sam+='< | ||
+ | sam+="</ | ||
- | bylo=" | + | ox=a[i].x |
- | spoj="< | + | oy=a[i].y |
- | if [[ " | + | } // Konec prochazeni |
- | spoj=" | + | |
- | else | + | |
- | spoj=" | + | |
- | fi | + | |
- | spoj=" | + | |
- | spoj=" | + | |
- | sam="< | + | // Do not forget to print last line when FOR ends! |
- | sam=" | + | samicon=geticon(a,i-1) |
- | if [[ " | + | if(sam == "" |
- | sam=" | + | sam='<table style="hadtbl">' |
- | fi | + | |
- | if [[ " | + | |
- | sam=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | sam=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | sam=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | sam=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | sam=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | sam=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | sam=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | sam=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | sam=" | + | |
- | fi | + | |
- | sam=" | + | |
- | if [[ " | + | |
- | sam=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | sam=" | + | |
- | fi | + | |
- | if [[ " | + | |
- | sam="$sam<b> | + | |
- | fi | + | |
- | # if [[ " | + | |
- | # | + | |
- | # fi | + | |
- | if [[ " | + | |
- | sam=" | + | |
- | fi | + | |
- | sam=" | + | |
- | #>&2 echo "$sam" | + | n[i]=new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point(a[i-1].x, |
- | >&2 echo "$co $obs" | + | vectorLayerDynamic.addFeatures(n[i]); |
+ | } // Konec armageddonu | ||
- | ox=" | + | var laycon |
- | oy=" | + | |
+ | var controls = {selector: new OpenLayers.Control.SelectFeature(laycon, | ||
+ | map.addControl(controls[' | ||
+ | controls[' | ||
- | i=$(($i+1)) | + | function createPopup(feature) |
+ | { | ||
+ | feature.popup | ||
+ | feature.geometry.getBounds().getCenterLonLat(), | ||
+ | null, | ||
+ | '< | ||
+ | null, | ||
+ | false, // Close button? | ||
+ | function() { controls[' | ||
+ | ); | ||
+ | // | ||
+ | map.addPopup(feature.popup); | ||
+ | } | ||
- | # Precti XML, vyfiltruj jen to co ma prijit do mapy a serad to dle umisteni | + | function destroyPopup(feature) { |
- | # Umisteni je razene kvuli vic vzorkum z jednoho mista | + | feature.popup.destroy(); |
+ | feature.popup = null; | ||
+ | } | ||
- | done <<< | + | // Run armageddon on initial load |
+ | armageddon() | ||
+ | </ | ||
- | # Do not forget to print last line when WHILE ends! | + | ==== Springs ==== |
- | if [[ " | + | |
- | sam="< | + | |
- | fi | + | |
- | echo "var n$i = new OpenLayers.Feature.Vector(new OpenLayers.Geometry.Point($kdex, | + | |
- | echo " | + | |
- | } # KONEC FCE SPAGETY !!! | + | To be able to better plan routes for collecting planarians, the knowledge of locations of springs seems to be important. So BioOSM can show them! Below is a script to get the locations from OSM XMLs obtainable from [[http:// |
- | echo "var ALL = new OpenLayers.Layer.Vector(' | + | <code bash studanky.sh> |
- | spagety " | + | # |
- | echo "map.addLayer(ALL);" | + | # generate BioOSM compatible |
+ | # Usage: studanky.sh osmdump.xml | ||
+ | # | ||
+ | # Download OSM file to be passed as $1 | ||
+ | # wget " | ||
+ | # gzip -kd ./ | ||
+ | # | ||
+ | # Pozor ^^ sezere spoustu rameti | ||
+ | # | ||
- | echo "var laycon | + | osm=$(cat "$1" | sed -e ' |
- | while IFS='' | + | |
- | echo "var $spag = new OpenLayers.Layer.Vector('Overlay', | + | |
- | spg=$(echo "$praseTC" | + | |
- | case "$spag" in | + | |
- | " | + | |
- | icon="animalia.png";; | + | |
- | " | + | |
- | icon="bacteria.png";; | + | |
- | " | + | |
- | icon=" | + | |
- | " | + | |
- | icon=" | + | |
- | " | + | |
- | icon=" | + | |
- | " | + | |
- | icon=" | + | |
- | *) | + | |
- | icon=" | + | |
- | esac | + | |
- | spagety | + | json=' |
- | echo " | + | |
- | done <<< | + | |
- | # Plostenky | + | while IFS='' |
- | spg=$(echo "$praseTC" | grep "< | + | n=$(echo "$spr" | grep -oPe 'k="name" v=" |
- | echo "var Platyhelminthes | + | lat=$(echo "$spr" | grep -oPe ' lat=" |
- | spagety | + | lon=$(echo |
- | echo "laycon.push(Platyhelminthes)" | + | |
+ | if [ " | ||
+ | continue; # <way> a tak | ||
+ | fi | ||
+ | if [[ " | ||
+ | n=" | ||
+ | >& | ||
+ | fi | ||
- | echo "var controls | + | json+="{" |
- | echo " selector: new OpenLayers.Control.SelectFeature(laycon, { onSelect: createPopup, onUnselect: destroyPopup })" | + | json+=" |
- | echo "};" | + | json+=" |
- | echo "map.addControl(controls[' | + | json+=" |
- | echo "controls[' | + | json+="}," |
+ | >&2 echo -e " | ||
+ | done <<< | ||
+ | echo " | ||
+ | </ | ||
+ | === LocalityID === | ||
+ | <code bash ajdy.sh> | ||
+ | #!/bin/bash | ||
- | echo " | + | T=$(mktemp) |
- | echo " feature.popup = new OpenLayers.Popup.FramedCloud('pop'," | + | unzip -p "$1" |
- | echo " | + | |
- | echo " | + | |
- | echo " '<div class=\"markerContent\">'+feature.attributes.description+'</div>'," | + | |
- | echo " | + | |
- | echo " | + | |
- | echo " | + | |
- | echo " | + | |
- | echo " //feature.popup.closeOnMove = true;" | + | |
- | echo " | + | |
- | echo "}" | + | |
- | echo " | ||
- | echo " | ||
- | echo " | ||
- | echo " | ||
+ | hf=$(cat " | ||
+ | # nejvyssi dosazene ID | ||
+ | mid=$(cat " | ||
+ | mid=$(($mid+1)) | ||
- | echo " | ||
- | echo " | ||
- | echo " | ||
- | echo " for (var i = map.layers.length - 1; i >= 1; i--) {" | ||
- | echo " | ||
- | echo " | ||
- | echo " | ||
- | echo " | ||
- | echo "function | + | function |
- | echo " for (var i=map.layers.length-1;i>=1;i--) {" | + | { |
- | echo " map.removeLayer(map.layers[i]);" | + | while IFS='' |
- | echo " }" | + | t=$(echo "$r" | grep -oe ' < |
- | echo " map.addLayer(Platyhelminthes)" | + | l=$(echo "$r" | grep -oe '< |
- | echo "}" | + | echo "$t@$l" |
+ | done <<< | ||
+ | } | ||
+ | srt=$(ll " | ||
- | echo "</script>" | + | uid=$mid |
- | echo "</html>" | + | while IFS='' |
+ | l=$(echo " | ||
+ | lid=$(cat " | ||
+ | if [[ "$lid" = "" | ||
+ | |||
+ | sedexp=" | ||
+ | #echo " | ||
+ | sed -E " | ||
+ | uid=$(($uid+1)) | ||
+ | fi | ||
+ | done <<< | ||
+ | |||
+ | D=$(mktemp -d) | ||
+ | cp -f " | ||
+ | zip -j " | ||
+ | |||
+ | rm -rfv " | ||
+ | rm -rfv "$D" | ||
</ | </ |
project/bioosm/start.txt · Last modified: 2023/09/21 12:15 by sachy